{ "type": "genome", "identifier": "GCF_002082905.2", "organism": "Legionella anisa", "title": "Legionella anisa", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002082905.2", "bioproject": "PRJNA224116", "biosample": "SAMN04875537", "wgs_master": "NBTX00000000.2", "refseq_category": "na", "taxid": "28082", "species_taxid": "28082", "organism_name": "Legionella anisa", "infraspecific_name": "strain=FDAARGOS_200", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2018/01/19", "asm_name": "ASM208290v2", "asm_submitter": "University of Maryland School of Medicine Institute for Genome Sciences (IGS) - sequencing center", "gbrs_paired_asm": "GCA_002082905.2", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/082/905/GCF_002082905.2_ASM208290v2", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4564423", "genome_size_ungapped": "4564423", "gc_percent": "38.500000", "replicon_count": "0", "scaffold_count": "4", "contig_count": "4", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002082905.2-RS_2024_04_22", "annotation_date": "2024-04-22", "total_gene_count": "4108", "protein_coding_gene_count": "3992", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2018-01-19", "dateModified": "2018-01-19", "datePublished": "2018-01-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Legionella anisa" ], "sample_taxid": [ "28082" ], "sample_host_organism": [ "Environment" ], "sample_host_organism_id": [], "sample_host_disease": [ "Water was collected during a legionellosis outbreak", "Not Applicable" ], "sample_host_disease_id": [], "sample_host_location": [ "USA:CA" ], "sample_host_location_id": [], "data_size": "1.291 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4564423", "Number of Sequences": "4", "Longest Sequences (bp)": "4234341", "N50 (bp)": "4234341", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "38.3", "Number of CDSs": "4020", "Average Protein Length": "326.1", "Coding Ratio (%)": "86.2", "Number of rRNAs": "9", "Number of tRNAs": "44", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Legionella anisa", "strain": "strain=FDAARGOS_200", "accession": "GCA_002082905.2", "taxid": 28082, "species_taxid": 28082, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1516, "total_fragments": 1520, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Legionella anisa", "strain": "strain=FDAARGOS_1480", "accession": "GCA_019930885.1", "taxid": 28082, "species_taxid": 28082, "relation_to_type": "type", "validated": true, "ani": 99.9947, "matched_fragments": 1477, "total_fragments": 1520, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Legionella anisa", "strain": "strain=WA-316-C3", "accession": "GCA_001467525.1", "taxid": 28082, "species_taxid": 28082, "relation_to_type": "type", "validated": true, "ani": 99.9532, "matched_fragments": 1439, "total_fragments": 1520, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Legionella anisa", "strain": "strain=WA-316-C3", "accession": "GCA_900639785.1", "taxid": 28082, "species_taxid": 28082, "relation_to_type": "type", "validated": true, "ani": 99.667, "matched_fragments": 1316, "total_fragments": 1520, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Legionella tucsonensis", "strain": "strain=ATCC 49180", "accession": "GCA_001468035.1", "taxid": 40335, "species_taxid": 40335, "relation_to_type": "type", "validated": true, "ani": 89.154, "matched_fragments": 956, "total_fragments": 1520, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella bozemanae", "strain": "strain=WIGA", "accession": "GCA_001467045.1", "taxid": 447, "species_taxid": 447, "relation_to_type": "type", "validated": true, "ani": 88.9704, "matched_fragments": 1066, "total_fragments": 1520, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella lytica", "strain": "strain=PCM 2298", "accession": "GCA_023921225.1", "taxid": 96232, "species_taxid": 96232, "relation_to_type": "type", "validated": true, "ani": 79.1397, "matched_fragments": 266, "total_fragments": 1520, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Legionella rowbothamii", "strain": "strain=LLAP6", "accession": "GCA_900639985.1", "taxid": 96229, "species_taxid": 96229, "relation_to_type": "type", "validated": true, "ani": 78.4158, "matched_fragments": 267, "total_fragments": 1520, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_001467525.1", "gtdb_species": "s__Legionella anisa", "ani": 99.9532, "matched_fragments": 1439, "total_fragments": 1520, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.76", "min_intra_species_ani": "99.61", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.93", "num_clustered_genomes": 6, "status": "conclusive" }, { "accession": "GCF_014109805.1", 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bozemanae", "ani": 88.9743, "matched_fragments": 1060, "total_fragments": 1520, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.47", "min_intra_species_ani": "97.91", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.91", "num_clustered_genomes": 5, "status": "-" }, { "accession": "GCF_001467945.1", "gtdb_species": "s__Legionella parisiensis", "ani": 88.1613, "matched_fragments": 1139, "total_fragments": 1520, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Legionellales;f__Legionellaceae;g__Legionella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.98", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 4, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.324, "cell_length": 0.259, "doubling_h": 0.38, "growth_tmp": 37.0, "optimum_tmp": 38.5, "optimum_ph": 6.9, "genome_size": 4426894.333, "gc_content": 38.268, "coding_genes": 2803.262, "rRNA16S_genes": 3.5, "tRNA_genes": 42.766, "gram_stain": 0.0, "sporulation": 0.0, "motility": 1.0, "range_salinity": null, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Legionella", "anisa" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }