# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_1	LOCUS_00010	sequence01:1095..1238(+)	frameshift		1008,978,1077,1239,1035	WP_010883928.1	hypothetical protein	97.9	41.5	65.3
MGA_8	LOCUS_00080	sequence01:12301..13449(+)	partial			WP_002657295.1	lipoprotein	100.0	71.0	99.2
MGA_27	LOCUS_00270	sequence01:43552..44124(-)	frameshift		44297	WP_010889830.1	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	100.0	62.1	99.5
MGA_28	LOCUS_00280	sequence01:44286..44471(-)	frameshift		44297	WP_010889830.1	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	95.1	19.0	100.0
MGA_77	LOCUS_00770	sequence01:97447..97650(+)	frameshift		97620	WP_010889817.1	rod-binding protein	94.0	56.6	82.5
MGA_100	LOCUS_01000	sequence01:119879..120355(+)	partial			WP_010889814.1	ABC transporter permease	100.0	48.5	93.7
MGA_170	LOCUS_01700	sequence01:198237..198959(+)	partial			WP_002657405.1	hypothetical protein	90.4	62.4	91.7
MGA_218	LOCUS_02180	sequence01:253619..254071(+)	frameshift		254035	WP_002657333.1	ribonuclease M5	98.0	81.2	90.5
MGA_325	LOCUS_03250	sequence01:384907..386040(-)	frameshift		386054	WP_010889759.1	phenylalanine--tRNA ligase subunit beta	100.0	66.6	98.9
MGA_326	LOCUS_03260	sequence01:385989..386606(-)	frameshift		386054	WP_010889759.1	phenylalanine--tRNA ligase subunit beta	96.1	34.8	92.4
MGA_459	LOCUS_04570	sequence01:528369..528899(+)	partial			WP_010889737.1	hypothetical protein	100.0	69.0	100.0
MGA_494	LOCUS_04920	sequence01:565930..566985(-)	frameshift		567047	WP_010889730.1	phosphopyruvate hydratase	100.0	81.1	98.6
MGA_495	LOCUS_04930	sequence01:567033..567230(-)	frameshift		567047	WP_010889730.1	phosphopyruvate hydratase	98.5	14.8	100.0
MGA_551	LOCUS_05490	sequence01:621272..621985(+)	frameshift		621982	WP_002656446.1	flagellar motor switch protein FliM	100.0	67.3	94.1
MGA_552	LOCUS_05500	sequence01:622012..622329(+)	frameshift		621982	WP_002656446.1	flagellar motor switch protein FliM	100.0	29.8	99.0
MGA_563	LOCUS_05610	sequence01:630715..630978(+)	partial			WP_010889722.1	RNA chaperone Hfq	100.0	54.7	100.0
MGA_588	LOCUS_05860	sequence01:662203..663525(-)	frameshift		663692	WP_002660591.1	glycerol-3-phosphate dehydrogenase/oxidase	100.0	83.5	95.0
MGA_607	LOCUS_06050	sequence01:683396..683749(+)	partial			WP_010890332.1	SIMPL domain-containing protein	99.1	50.2	56.0
MGA_618	LOCUS_06160	sequence01:693979..694668(-)	frameshift		694742	WP_010889706.1	hypothetical protein	100.0	66.6	73.4
MGA_619	LOCUS_06170	sequence01:694713..695012(-)	frameshift		694742	WP_010889706.1	hypothetical protein	77.8	22.4	80.5
MGA_629	LOCUS_06270	sequence01:707392..708135(-)	partial			WP_002656686.1	hemolysin family protein	100.0	60.0	100.0
MGA_719	LOCUS_07170	sequence01:801810..802619(-)	frameshift		802624	WP_002656911.1	hypothetical protein	100.0	59.3	99.3
MGA_720	LOCUS_07180	sequence01:802562..803173(-)	frameshift		802624	WP_002656911.1	hypothetical protein	90.1	40.3	96.7
MGA_776	LOCUS_07740	sequence01:861467..861793(-)	frameshift		861741	WP_002656594.1	uracil-DNA glycosylase	84.3	40.8	100.0
MGA_777	LOCUS_07750	sequence01:861688..862137(-)	frameshift		861741	WP_002656594.1	uracil-DNA glycosylase	95.3	63.7	93.0
MGA_806	LOCUS_08040	sequence01:890392..891030(+)	frameshift		890997	WP_010957235.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	97.6	62.2	38.4
MGA_807	LOCUS_08050	sequence01:890993..891424(+)	frameshift		890997	WP_010957235.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	96.5	39.2	55.8
MGA_812	LOCUS_08100	sequence01:895885..896130(+)	partial			WP_002658367.1	rhodanese-like domain-containing protein	100.0	65.9	98.8
MGA_829	LOCUS_08260	sequence02:919..1386(+)	partial			WP_014023152.1	RNA-guided endonuclease TnpB family protein	87.7	36.1	90.4
MGA_832	LOCUS_08290	sequence02:4981..5175(+)	frameshift,internal_stop_codon	4976..4978(+),4832..4834(+)	4810	WP_010890288.1	plasmid maintenance protein	71.9	10.2	64.0
MGA_840	LOCUS_08370	sequence02:13019..13228(-)	frameshift		13208,13450,13402	WP_010890299.1	right-handed parallel beta-helix repeat-containing protein	76.8	6.0	52.8
MGA_853	LOCUS_08490	sequence03:1440..1844(-)	frameshift		1885	WP_010890290.1	DnaB helicase C-terminal domain-containing protein	100.0	48.7	100.0
MGA_854	LOCUS_08500	sequence03:1862..2266(-)	frameshift		1885	WP_010890290.1	DnaB helicase C-terminal domain-containing protein	94.8	46.2	100.0
MGA_855	LOCUS_08510	sequence03:2294..2722(-)	partial			WP_010890289.1	DUF226 domain-containing protein	90.1	74.9	96.1
MGA_873	LOCUS_08690	sequence03:16861..17070(+)	partial			WP_010256673.1	hypothetical protein	100.0	46.9	100.0
MGA_877	LOCUS_08730	sequence03:18600..21896(+)	partial			WP_055166304.1	tape measure protein	16.6	16.6	24.2
MGA_882	LOCUS_08780	sequence03:25323..25718(+)	frameshift		25703	WP_014023152.1	RNA-guided endonuclease TnpB family protein	96.2	33.4	90.5
MGA_883	LOCUS_08790	sequence03:25730..26488(+)	frameshift		25703	WP_014023152.1	RNA-guided endonuclease TnpB family protein	95.6	63.9	90.0
MGA_884	LOCUS_08800	sequence03:26763..27068(-)	frameshift		27035,27191	WP_014023153.1	P13 family porin	96.0	57.5	85.6
MGA_886	LOCUS_08820	sequence03:28370..>28930(-)	partial			WP_010890300.1	P12 family lipoprotein	100.0	62.6	95.2
MGA_893	LOCUS_08880	sequence04:4776..5033(-)	frameshift		5256,5076	WP_010883741.1	DUF643 domain-containing protein	100.0	47.5	100.0
MGA_904	LOCUS_08990	sequence04:14626..15228(+)	internal_stop_codon	15226..15228(+)		WP_010883732.1	ERF family protein	83.0	49.3	100.0
MGA_905	LOCUS_09000	sequence04:15295..15642(+)	internal_stop_codon	15226..15228(+)		WP_010883872.1	ERF family protein	100.0	34.1	99.1
MGA_933	LOCUS_09280	sequence04:32456..33289(-)	frameshift		32470	WP_010883789.1	DUF1073 domain-containing protein	98.6	67.1	97.1
MGA_952	LOCUS_09470	sequence04:47486..47668(-)	frameshift		47721	WP_010883750.1	BlyB family putative holin accessory protein	100.0	54.1	100.0
MGA_975	LOCUS_09690	sequence05:225..374(+)	frameshift,internal_stop_codon	175..177(+)	600,201,396,369	WP_010883744.1	DUF787 family protein	98.0	13.0	100.0
MGA_976	LOCUS_09700	sequence05:991..1170(+)	frameshift		760,1088,947,893	WP_010258866.1	DUF1463 domain-containing protein	54.2	22.5	100.0
MGA_977	LOCUS_09710	sequence05:1487..1618(+)	frameshift		1396,1285,1207	WP_002658668.1	DUF1473 family protein	100.0	28.5	90.7
MGA_978	LOCUS_09720	sequence05:1686..1850(+)	frameshift		1671	WP_010883855.1	DUF1322 family protein	72.2	50.0	97.4
MGA_979	LOCUS_09730	sequence05:2306..2530(+)	frameshift		2647,2023,2122,2236,2527	WP_010883745.1	DUF759 family protein	98.6	17.2	100.0
MGA_980	LOCUS_09740	sequence05:2533..2673(+)	frameshift		2524,2644	WP_010883769.1	DUF759 family protein	80.4	8.7	100.0
MGA_981	LOCUS_09750	sequence05:2715..3125(+)	frameshift		2524,2644	WP_010883745.1	DUF759 family protein	100.0	32.1	96.3
MGA_982	LOCUS_09760	sequence05:3148..3558(+)	frameshift		3549	WP_010883746.1	DUF792 family protein	98.5	59.0	79.1
MGA_983	LOCUS_09770	sequence05:3576..3830(+)	frameshift		3549	WP_010883746.1	DUF792 family protein	100.0	37.0	100.0
MGA_1006	LOCUS_10000	sequence05:19671..20327(+)	internal_stop_codon	20325..20327(+)		WP_010883724.1	ErpB	67.0	38.6	89.7
MGA_1007	LOCUS_10010	sequence05:20424..20807(+)	internal_stop_codon	20325..20327(+)		WP_010883724.1	ErpB	100.0	33.6	96.1
MGA_1016	LOCUS_10100	sequence05:27588..28082(+)	frameshift		28073	WP_002658423.1	hypothetical protein	100.0	51.4	98.8
MGA_1017	LOCUS_10110	sequence06:850..1335(+)	frameshift		1474,612,741,774,828,657,1329,1429,1468,636	WP_010258562.1	hypothetical protein	98.1	37.9	99.4
MGA_1018	LOCUS_10120	sequence06:1247..1465(+)	frameshift		1323,1468,1462,1423	WP_010258562.1	hypothetical protein	69.4	12.0	74.0
MGA_1019	LOCUS_10130	sequence06:1478..1774(+)	frameshift		1323,1468,1462,1423	WP_010258562.1	hypothetical protein	100.0	23.5	99.0
MGA_1020	LOCUS_10140	sequence06:1884..2033(+)	frameshift		2138,2027,2231	WP_010890375.1	S2/P23 family protein	98.0	17.0	100.0
MGA_1021	LOCUS_10150	sequence06:2432..2719(+)	frameshift		2436,2229,2694	WP_010890375.1	S2/P23 family protein	90.5	30.5	100.0
MGA_1032	LOCUS_10260	sequence06:13031..13210(+)	partial			WP_010258115.1	BlyA family holin	66.1	66.1	92.3
MGA_1073	LOCUS_10670	sequence06:44637..44876(-)	partial			WP_010890394.1	hypothetical protein	69.6	69.6	76.4
MGA_1082	LOCUS_10760	sequence06:53342..53980(-)	partial			WP_010890326.1	complement regulator-acquiring protein	90.6	66.2	34.9
MGA_1083	LOCUS_10770	sequence06:54205..54618(-)	partial			WP_010890397.1	complement regulator-acquiring protein	54.7	32.3	40.7
MGA_1116	LOCUS_11080	sequence08:496..666(+)	frameshift		897,654,798	WP_010883882.1	ParA family protein	94.6	21.1	100.0
MGA_1117	LOCUS_11090	sequence08:1095..1247(+)	frameshift		1051,895	WP_010883882.1	ParA family protein	100.0	19.9	98.0
MGA_1122	LOCUS_11140	sequence08:4677..5153(-)	internal_stop_codon	5232..5234(-)		WP_010883864.1	site-specific integrase	100.0	61.2	94.3
MGA_1123	LOCUS_11150	sequence08:5232..5453(-)	internal_stop_codon	5232..5234(-)		WP_010883864.1	site-specific integrase	100.0	28.3	74.0
MGA_1133	LOCUS_11250	sequence08:13704..14153(+)	frameshift		14123	WP_010883929.1	DUF228 domain-containing protein	100.0	78.0	90.6
MGA_1134	LOCUS_11260	sequence08:14150..14278(+)	frameshift		14123	WP_010883929.1	DUF228 domain-containing protein	100.0	22.0	97.6
MGA_1135	LOCUS_11270	sequence08:14300..14812(+)	frameshift		14791	WP_010883814.1	hypothetical protein	96.5	51.4	100.0
MGA_1136	LOCUS_11280	sequence08:14766..15263(+)	frameshift		14788	WP_010883774.1	hypothetical protein	95.2	49.2	99.4
MGA_1140	LOCUS_11320	sequence08:16495..16737(+)	frameshift		16701	WP_010883726.1	DUF764 family protein	90.0	38.3	97.2
MGA_1141	LOCUS_11330	sequence08:16722..17060(+)	frameshift		16701	WP_010883776.1	DUF764 family protein	100.0	59.6	99.1
MGA_1144	LOCUS_11360	sequence08:18689..19069(+)	frameshift		18699	WP_010883794.1	DUF1473 family protein	96.8	80.8	99.2
MGA_1148	LOCUS_11400	sequence08:20882..21361(+)	frameshift		20771	WP_010883770.1	DUF792 family protein	100.0	70.0	96.2
MGA_1150	LOCUS_11420	sequence08:22333..22476(+)	internal_stop_codon	22474..22476(+)		WP_010883798.1	DUF777 family protein	100.0	25.5	97.9
MGA_1153	LOCUS_11450	sequence08:24131..24568(+)	frameshift		24556	WP_010883801.1	DUF735 family protein	97.9	70.6	100.0
MGA_1161	LOCUS_11530	sequence08:28097..28444(-)	internal_stop_codon	28487..28489(-),28577..28579(-)		WP_014017690.1	ERF family protein	100.0	33.9	94.8
MGA_1162	LOCUS_11540	sequence08:28577..29017(-)	internal_stop_codon	28487..28489(-),29093..29095(-),28577..28579(-)		WP_010883781.1	ERF family protein	100.0	43.5	77.4
MGA_1169	LOCUS_11610	sequence08:34896..35264(+)	frameshift		35231	WP_010883885.1	DUF261 domain-containing protein	94.3	81.6	98.3
MGA_1170	LOCUS_11620	sequence08:35465..35800(-)	frameshift,internal_stop_codon	35877..35879(-)	35600,35909,35981	WP_002658529.1	tyrosine-type recombinase/integrase	85.6	36.8	66.3
MGA_1172	LOCUS_11640	sequence08:36529..36831(+)	frameshift		36960,36804	WP_010883886.1	plasminogen-binding protein ErpP	92.0	49.5	100.0
MGA_1173	LOCUS_11650	sequence08:37129..37329(+)	frameshift		37123,37300,37525,37447,37597	WP_010883887.1	ErpQ	84.8	16.3	98.2
MGA_1174	LOCUS_11660	sequence08:37329..37454(+)	frameshift		37650,37123,37699,37300,37525,37447,37639,37597	WP_010883887.1	ErpQ	100.0	12.0	100.0
MGA_1175	LOCUS_11670	sequence08:37826..38050(+)	frameshift		37872,38049,37650,37875,37695,37638,37596,38079	WP_010883887.1	ErpQ	78.4	16.9	87.9
MGA_1176	LOCUS_11680	sequence08:39029..39457(+)	frameshift		39418	WP_010883788.1	DUF603 domain-containing protein	95.8	72.3	89.0
MGA_1177	LOCUS_11690	sequence08:39591..39746(+)	frameshift		39761,39740,39773,39977	WP_010883888.1	PBSX family phage terminase large subunit	98.0	11.1	100.0
MGA_1178	LOCUS_11700	sequence08:40351..40938(+)	frameshift		40066,40093,40357	WP_010883888.1	PBSX family phage terminase large subunit	99.0	42.9	98.4
MGA_1179	LOCUS_11710	sequence08:41003..41176(+)	frameshift		41251,41143	WP_010883789.1	DUF1073 domain-containing protein	82.5	11.5	100.0
MGA_1180	LOCUS_11720	sequence08:41205..42224(+)	frameshift		41251,41143	WP_010883789.1	DUF1073 domain-containing protein	95.6	79.6	96.9
MGA_1184	LOCUS_11760	sequence08:44307..44525(+)	frameshift		44522	WP_010883792.1	DUF228 domain-containing protein	100.0	37.7	100.0
MGA_1185	LOCUS_11770	sequence08:44753..44881(+)	frameshift		44522	WP_010883929.1	DUF228 domain-containing protein	100.0	22.0	97.6
MGA_1189	LOCUS_11810	sequence08:46708..46905(+)	internal_stop_codon	46903..46905(+)		WP_002658432.1	hypothetical protein	100.0	50.4	98.5
MGA_1190	LOCUS_11820	sequence08:46909..47097(+)	internal_stop_codon	46903..46905(+)		WP_002658432.1	hypothetical protein	100.0	48.1	100.0
MGA_1219	LOCUS_12110	sequence08:67407..68444(+)	partial			WP_010883925.1	laminin-binding protein ErpX	44.3	44.3	94.1
MGA_1223	LOCUS_12150	sequence08:71343..71828(+)	internal_stop_codon	71826..71828(+)		WP_010883851.1	DUF1073 domain-containing protein	100.0	39.6	100.0
MGA_1224	LOCUS_12160	sequence08:71841..72221(+)	frameshift,internal_stop_codon	71826..71828(+)	72203	WP_010883789.1	DUF1073 domain-containing protein	100.0	31.0	89.7
MGA_1225	LOCUS_12170	sequence08:72410..72568(+)	frameshift		72209	WP_010883789.1	DUF1073 domain-containing protein	100.0	12.8	100.0
MGA_1232	LOCUS_12240	sequence08:77272..77403(-)	frameshift,internal_stop_codon	77209..77211(-),77020..77022(-)	77289,77052	WP_010890294.1	hypothetical protein	90.7	21.5	92.3
MGA_1233	LOCUS_12250	sequence08:77429..77656(-)	partial			WP_010890295.1	DUF1073 domain-containing protein	100.0	22.0	97.3
MGA_1235	LOCUS_12270	sequence08:77906..80053(-)	partial			WP_010883927.1	DNA methyltransferase	100.0	65.8	97.6
MGA_1236	LOCUS_12280	sequence08:80386..81165(-)	frameshift		80394	WP_010883927.1	DNA methyltransferase	99.6	23.8	97.7
MGA_1237	LOCUS_12290	sequence08:81384..81665(-)	frameshift,internal_stop_codon	81925..81927(-)	81525,81372,81837,81702	WP_002665626.1	type I restriction endonuclease	89.2	21.1	56.6
MGA_1238	LOCUS_12300	sequence08:82183..82452(+)	internal_stop_codon	82450..82452(+)		WP_010890322.1	MFS transporter	87.6	19.9	78.2
MGA_1240	LOCUS_12320	sequence08:85253..85600(-)	internal_stop_codon	85721..85723(-)		WP_010890331.1	lipoprotein P35	100.0	43.7	75.7
MGA_1241	LOCUS_12330	sequence08:85901..86095(-)	internal_stop_codon	85901..85903(-),85721..85723(-)		WP_010890325.1	virulence associated lipoprotein	46.9	6.7	73.3
MGA_1243	LOCUS_12350	sequence08:87864..88019(-)	frameshift,internal_stop_codon	88065..88067(-)	87878	WP_010883949.1	plasmid maintenance protein	100.0	41.8	70.6
MGA_1247	LOCUS_12380	sequence09:1453..1992(-)	internal_stop_codon	1996..1998(-)		WP_010883890.1	DUF1357 domain-containing protein	99.4	77.4	93.3
MGA_1248	LOCUS_12390	sequence09:1996..2148(-)	internal_stop_codon	1996..1998(-)		WP_010883890.1	DUF1357 domain-containing protein	88.0	19.1	90.9
MGA_1258	LOCUS_12490	sequence09:11501..11779(-)	partial			WP_010883737.1	Bdr family repetitive protein	98.9	40.0	68.1
MGA_1289	LOCUS_12780	sequence10:530..1543(-)	partial			WP_010890314.1	class I SAM-dependent DNA methyltransferase	97.6	25.8	74.2
MGA_1290	LOCUS_12790	sequence10:2138..2542(-)	frameshift		2552,2144,2741	WP_010890314.1	class I SAM-dependent DNA methyltransferase	88.1	9.2	70.3
MGA_1291	LOCUS_12800	sequence10:2545..2733(-)	frameshift		2552,2741	WP_010890314.1	class I SAM-dependent DNA methyltransferase	91.9	4.5	64.9
MGA_1292	LOCUS_12810	sequence10:2736..2903(-)	frameshift		2552,2741	WP_010890314.1	class I SAM-dependent DNA methyltransferase	98.2	4.2	94.4
MGA_1295	LOCUS_12840	sequence10:6124..6303(-)	frameshift		6250,6132	WP_010890314.1	class I SAM-dependent DNA methyltransferase	71.2	3.4	72.7
MGA_1306	LOCUS_12950	sequence10:18293..18493(+)	frameshift,internal_stop_codon	18082..18084(+),18493..18495(+),18166..18168(+),18096..18098(+)	18198,18159	WP_010890314.1	class I SAM-dependent DNA methyltransferase	100.0	5.2	80.3
MGA_1310	LOCUS_12990	sequence10:22393..22977(-)	partial			WP_010890334.1	immunogenic protein P37	70.6	42.5	41.1
MGA_1312	LOCUS_13010	sequence10:23613..23990(+)	frameshift		23560,23623	WP_010890362.1	hypothetical protein	96.8	52.1	39.2
MGA_1318	LOCUS_13070	sequence10:27906..28532(-)	internal_stop_codon	27906..27908(-)		WP_010890341.1	hypothetical protein	100.0	73.6	49.1
MGA_1325	LOCUS_13140	sequence10:35706..35894(-)	partial			WP_014023068.1	NINE protein	80.6	53.2	90.0
MGA_1336	LOCUS_13250	sequence11:13374..13595(-)	partial			WP_010890331.1	lipoprotein P35	93.2	25.9	57.4
MGA_1337	LOCUS_13260	sequence11:13588..14052(-)	frameshift		14087	WP_010883946.1	plasmid maintenance protein	99.4	42.4	83.3
MGA_1338	LOCUS_13270	sequence11:14651..14806(-)	frameshift,internal_stop_codon	14852..14854(-)	14665	WP_010883949.1	plasmid maintenance protein	100.0	41.8	70.6
MGA_1342	LOCUS_13310	sequence12:1..3799(+)	internal_stop_codon	3797..3799(+)		WP_075552700.1	variable large family protein	18.6	68.6	39.8
MGA_1343	LOCUS_13320	sequence12:3956..5248(+)	frameshift,internal_stop_codon	3797..3799(+)	5245	WP_075552700.1	variable large family protein	53.0	65.7	41.3
MGA_1344	LOCUS_13330	sequence12:5296..6405(+)	frameshift		6402,5245	WP_075552700.1	variable large family protein	61.8	65.7	39.5
MGA_1345	LOCUS_13340	sequence12:6453..6848(+)	frameshift		6402	WP_075552700.1	variable large family protein	93.9	41.5	40.4
MGA_1346	LOCUS_13350	sequence12:7470..7724(+)	frameshift		7762	WP_183221031.1	DUF226 domain-containing protein	71.4	34.6	68.8
MGA_1355	LOCUS_13440	sequence12:15097..15243(+)	frameshift,internal_stop_codon	14917..14919(+),14859..14861(+),14926..14928(+)	15058,14931,14996	WP_014023152.1	RNA-guided endonuclease TnpB family protein	100.0	12.7	79.2
MGA_1361	LOCUS_13500	sequence12:18901..19323(+)	internal_stop_codon	18853..18855(+),19321..19323(+)		WP_010890312.1	chromosome replication/partitioning protein	97.9	67.0	53.6
MGA_1363	LOCUS_13520	sequence12:21094..21249(-)	frameshift		21275	WP_010890349.1	hypothetical protein	100.0	70.8	96.1
