{ "type": "genome", "identifier": "GCF_002086475.1", "organism": "Mycobacterium paraseoulense", "title": "Mycobacterium paraseoulense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "San Raffaele Scientific Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002086475.1", "bioproject": "PRJNA224116", "biosample": "SAMN06064254", "wgs_master": "MVIE00000000.1", "refseq_category": "na", "taxid": "590652", "species_taxid": "590652", "organism_name": "Mycobacterium paraseoulense", "infraspecific_name": "strain=DSM 45000", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/04/11", "asm_name": "ASM208647v1", "asm_submitter": "San Raffaele Scientific Institute", "gbrs_paired_asm": "GCA_002086475.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/086/475/GCF_002086475.1_ASM208647v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6078492", "genome_size_ungapped": "6078492", "gc_percent": "68.000000", "replicon_count": "0", "scaffold_count": "267", "contig_count": "267", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002086475.1-RS_2024_08_01", "annotation_date": "2024-08-01", "total_gene_count": "5907", "protein_coding_gene_count": "5689", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-04-11", "dateModified": "2017-04-11", "datePublished": "2017-04-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycobacterium paraseoulense" ], "sample_taxid": [ "590652" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.680 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 2.08, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6078492", "Number of Sequences": "267", "Longest Sequences (bp)": "281352", "N50 (bp)": "108116", "Gap Ratio (%)": "0.000016", "GCcontent (%)": "67.9", "Number of CDSs": "5623", "Average Protein Length": "320.9", "Coding Ratio (%)": "89.0", "Number of rRNAs": "3", "Number of tRNAs": "58", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycobacterium paraseoulense", "strain": "strain=DSM 45000", "accession": "GCA_002086475.1", "taxid": 590652, "species_taxid": 590652, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1951, "total_fragments": 1955, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Mycobacterium paraseoulense", "strain": "strain=JCM 16952", "accession": "GCA_010731655.1", "taxid": 590652, "species_taxid": 590652, "relation_to_type": "type", "validated": true, "ani": 99.996, "matched_fragments": 1953, "total_fragments": 1955, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Mycobacterium seoulense", "strain": "strain=JCM 16018", "accession": "GCA_010731595.1", "taxid": 386911, "species_taxid": 386911, "relation_to_type": "type", "validated": true, "ani": 94.7477, "matched_fragments": 1651, "total_fragments": 1955, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium nebraskense", "strain": "strain=DSM 44803", "accession": "GCA_002102255.1", "taxid": 244292, "species_taxid": 244292, "relation_to_type": "type", "validated": true, "ani": 89.4128, "matched_fragments": 1501, "total_fragments": 1955, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium avium subsp. avium", "strain": "strain=DSM 44156", "accession": "GCA_009741445.1", "taxid": 44454, "species_taxid": 1764, "relation_to_type": "type", "validated": true, "ani": 84.4962, "matched_fragments": 1290, "total_fragments": 1955, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium intracellulare", "strain": "strain=ATCC 13950", "accession": "GCA_023278525.1", "taxid": 1767, "species_taxid": 1767, "relation_to_type": "suspected-type", "validated": true, "ani": 84.2538, "matched_fragments": 1302, "total_fragments": 1955, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium intracellulare", "strain": "strain=ATCC 13950", "accession": "GCA_000277125.1", "taxid": 1767, "species_taxid": 1767, "relation_to_type": "suspected-type", "validated": true, "ani": 84.2521, "matched_fragments": 1301, "total_fragments": 1955, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium mantenii", "strain": "strain=JCM 18113", "accession": "GCA_010731775.1", "taxid": 560555, "species_taxid": 560555, "relation_to_type": "type", "validated": true, "ani": 83.959, "matched_fragments": 1397, "total_fragments": 1955, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium saskatchewanense", "strain": "strain=JCM 13016", "accession": "GCA_010729105.1", "taxid": 220927, "species_taxid": 220927, "relation_to_type": "type", "validated": true, "ani": 83.2479, "matched_fragments": 1222, "total_fragments": 1955, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium helveticum", "strain": "strain=16-83", "accession": "GCA_007714205.1", "taxid": 2592811, "species_taxid": 2592811, "relation_to_type": "type", "validated": true, "ani": 83.2346, "matched_fragments": 1077, "total_fragments": 1955, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium saskatchewanense", "strain": "strain=DSM 44616", "accession": "GCA_002101875.1", "taxid": 220927, "species_taxid": 220927, "relation_to_type": "type", "validated": true, "ani": 83.2043, "matched_fragments": 1206, "total_fragments": 1955, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 2.08, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_010731655.1", "gtdb_species": "s__Mycobacterium paraseoulense", "ani": 99.996, "matched_fragments": 1953, "total_fragments": 1955, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "conclusive" }, { "accession": "GCF_010731595.1", "gtdb_species": "s__Mycobacterium seoulense", 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