{ "type": "genome", "identifier": "GCF_002086485.1", "organism": "Mycobacterium aquaticum", "title": "Mycobacterium aquaticum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "San Raffaele Scientific Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002086485.1", "bioproject": "PRJNA224116", "biosample": "SAMN06064228", "wgs_master": "MVHF00000000.1", "refseq_category": "reference genome", "taxid": "1927124", "species_taxid": "1927124", "organism_name": "Mycobacterium aquaticum", "infraspecific_name": "strain=RW6", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/04/11", "asm_name": "ASM208648v1", "asm_submitter": "San Raffaele Scientific Institute", "gbrs_paired_asm": "GCA_002086485.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/086/485/GCF_002086485.1_ASM208648v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7927592", "genome_size_ungapped": "7927592", "gc_percent": "66.500000", "replicon_count": "0", "scaffold_count": "111", "contig_count": "111", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002086485.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "7701", "protein_coding_gene_count": "7508", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-04-11", "dateModified": "2017-04-11", "datePublished": "2017-04-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycobacterium aquaticum" ], "sample_taxid": [ "1927124" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "2.192 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7927592", "Number of Sequences": "111", "Longest Sequences (bp)": "432945", "N50 (bp)": "135946", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.5", "Number of CDSs": "7608", "Average Protein Length": "317.8", "Coding Ratio (%)": "91.5", "Number of rRNAs": "3", "Number of tRNAs": "60", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycobacterium aquaticum", "strain": "strain=RW6", "accession": "GCA_002086485.1", "taxid": 1927124, "species_taxid": 1927124, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2584, "total_fragments": 2589, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Mycobacterium dioxanotrophicus", "strain": "strain=PH-06", "accession": "GCA_002157835.1", "taxid": 482462, "species_taxid": 482462, "relation_to_type": "type", "validated": true, "ani": 92.7495, "matched_fragments": 2046, "total_fragments": 2589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium mageritense", "strain": "strain=CIP 104973", "accession": "GCA_000612825.1", "taxid": 53462, "species_taxid": 53462, "relation_to_type": "type", "validated": true, "ani": 82.7342, "matched_fragments": 1605, "total_fragments": 2589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium mageritense", "strain": "strain=JCM 12375", "accession": "GCA_010727475.1", "taxid": 53462, "species_taxid": 53462, "relation_to_type": "type", "validated": true, "ani": 82.7235, "matched_fragments": 1612, "total_fragments": 2589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium boenickei", "strain": "strain=JCM 15653", "accession": "GCA_010731295.1", "taxid": 146017, "species_taxid": 146017, "relation_to_type": "type", "validated": true, "ani": 82.0087, "matched_fragments": 1327, "total_fragments": 2589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium neworleansense", "strain": "strain=type strain: ATCC 49404", "accession": "GCA_001245615.1", "taxid": 146018, "species_taxid": 146018, "relation_to_type": "type", "validated": true, "ani": 81.9686, "matched_fragments": 1282, "total_fragments": 2589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium houstonense", "strain": "strain=type strain: ATCC 49403", "accession": "GCA_900078665.2", "taxid": 146021, "species_taxid": 146021, "relation_to_type": "type", "validated": true, "ani": 81.8336, "matched_fragments": 1277, "total_fragments": 2589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium nivoides", "strain": "strain=DL90", "accession": "GCA_003855255.1", "taxid": 2487344, "species_taxid": 2487344, "relation_to_type": "type", "validated": true, "ani": 81.8312, "matched_fragments": 1370, "total_fragments": 2589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium septicum", "strain": "strain=ATCC 700731", "accession": "GCA_012396425.1", "taxid": 98668, "species_taxid": 98668, "relation_to_type": "type", "validated": true, "ani": 81.7859, "matched_fragments": 1358, "total_fragments": 2589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium conceptionense", "strain": "strain=CCUG 50187", "accession": "GCA_002102065.1", "taxid": 451644, "species_taxid": 451644, "relation_to_type": "suspected-type", "validated": true, "ani": 81.7369, "matched_fragments": 1252, "total_fragments": 2589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium wolinskyi", "strain": "strain=ATCC 700010", "accession": "GCA_002101965.1", "taxid": 59750, "species_taxid": 59750, "relation_to_type": "type", "validated": true, "ani": 81.7032, "matched_fragments": 1372, "total_fragments": 2589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium septicum", "strain": "strain=type strain: DSM 44393", "accession": "GCA_000455325.1", "taxid": 98668, "species_taxid": 98668, "relation_to_type": "type", "validated": true, "ani": 81.6852, "matched_fragments": 1381, "total_fragments": 2589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "[Mycobacterium] fortunisiensis", "strain": "strain=TNTM28", "accession": "GCA_019050325.1", "taxid": 2600579, "species_taxid": 2600579, "relation_to_type": "type", "validated": true, "ani": 81.678, "matched_fragments": 1154, "total_fragments": 2589, "ani_threshold": 95, "status": "below_threshold" }, { 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"organism_name": "Mycolicibacterium llatzerense", "strain": "strain=MG13", "accession": "GCA_025331195.1", "taxid": 280871, "species_taxid": 280871, "relation_to_type": "type", "validated": true, "ani": 80.0366, "matched_fragments": 955, "total_fragments": 2589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium pallens", "strain": "strain=JCM 16370", "accession": "GCA_019456675.1", "taxid": 370524, "species_taxid": 370524, "relation_to_type": "type", "validated": true, "ani": 79.4703, "matched_fragments": 870, "total_fragments": 2589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium crocinum", "strain": "strain=JCM 16369", "accession": "GCA_022370635.3", "taxid": 388459, "species_taxid": 388459, "relation_to_type": "type", "validated": true, "ani": 79.4053, "matched_fragments": 866, "total_fragments": 2589, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium mengxianglii", 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