{ "type": "genome", "identifier": "GCF_002086735.1", "organism": "Mycobacterium scrofulaceum", "title": "Mycobacterium scrofulaceum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "San Raffaele Scientific Institute", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002086735.1", "bioproject": "PRJNA224116", "biosample": "SAMN06064259", "wgs_master": "MVIJ00000000.1", "refseq_category": "reference genome", "taxid": "1783", "species_taxid": "1783", "organism_name": "Mycobacterium scrofulaceum", "infraspecific_name": "strain=DSM 43992", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/04/11", "asm_name": "ASM208673v1", "asm_submitter": "San Raffaele Scientific Institute", "gbrs_paired_asm": "GCA_002086735.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/086/735/GCF_002086735.1_ASM208673v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6170273", "genome_size_ungapped": "6170273", "gc_percent": "68.500000", "replicon_count": "0", "scaffold_count": "184", "contig_count": "184", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002086735.1-RS_2024_08_07", "annotation_date": "2024-08-07", "total_gene_count": "5945", "protein_coding_gene_count": "5675", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-04-11", "dateModified": "2017-04-11", "datePublished": "2017-04-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycobacterium scrofulaceum" ], "sample_taxid": [ "1783" ], "sample_host_organism": [ "not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": 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95, "status": "below_threshold" }, { "organism_name": "Mycobacterium intracellulare", "strain": "strain=ATCC 13950", "accession": "GCA_000277125.1", "taxid": 1767, "species_taxid": 1767, "relation_to_type": "suspected-type", "validated": true, "ani": 85.1191, "matched_fragments": 1389, "total_fragments": 1979, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium intracellulare", "strain": "strain=ATCC 13950", "accession": "GCA_023278525.1", "taxid": 1767, "species_taxid": 1767, "relation_to_type": "suspected-type", "validated": true, "ani": 85.1171, "matched_fragments": 1389, "total_fragments": 1979, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium colombiense", "strain": "strain=CECT 3035", "accession": "GCA_002105755.1", "taxid": 339268, "species_taxid": 339268, "relation_to_type": "suspected-type", "validated": true, "ani": 84.3498, "matched_fragments": 1358, "total_fragments": 1979, "ani_threshold": 95, "status": 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}, { "organism_name": "Mycobacterium mantenii", "strain": "strain=JCM 18113", "accession": "GCA_010731775.1", "taxid": 560555, "species_taxid": 560555, "relation_to_type": "type", "validated": true, "ani": 84.2781, "matched_fragments": 1418, "total_fragments": 1979, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium paraintracellulare", "strain": "strain=MOTT64", "accession": "GCA_000276825.1", "taxid": 1138383, "species_taxid": 1138383, "relation_to_type": "suspected-type", "validated": true, "ani": 84.2536, "matched_fragments": 1340, "total_fragments": 1979, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium bohemicum", "strain": "strain=DSM 44277", "accession": "GCA_002102025.1", "taxid": 56425, "species_taxid": 56425, "relation_to_type": "type", "validated": true, "ani": 83.5065, "matched_fragments": 1262, "total_fragments": 1979, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { 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