{
    "type": "genome",
    "identifier": "GCF_002086795.1",
    "organism": "Mycolicibacterium tusciae",
    "title": "Mycolicibacterium tusciae",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "San Raffaele Scientific Institute",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_002086795.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN06064262",
        "wgs_master": "MVIM00000000.1",
        "refseq_category": "reference genome",
        "taxid": "75922",
        "species_taxid": "75922",
        "organism_name": "Mycolicibacterium tusciae",
        "infraspecific_name": "strain=DSM 44338",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/04/11",
        "asm_name": "ASM208679v1",
        "asm_submitter": "San Raffaele Scientific Institute",
        "gbrs_paired_asm": "GCA_002086795.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/086/795/GCF_002086795.1_ASM208679v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "6162880",
        "genome_size_ungapped": "6162880",
        "gc_percent": "65.500000",
        "replicon_count": "0",
        "scaffold_count": "70",
        "contig_count": "70",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_002086795.1-RS_2024_03_19",
        "annotation_date": "2024-03-19",
        "total_gene_count": "6061",
        "protein_coding_gene_count": "5896",
        "non_coding_gene_count": "52",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-04-11",
    "dateModified": "2017-04-11",
    "datePublished": "2017-04-11",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Mycolicibacterium tusciae"
        ],
        "sample_taxid": [
            "75922"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "missing"
        ],
        "sample_host_location_id": [],
        "data_size": "1.709 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "6162880",
        "Number of Sequences": "70",
        "Longest Sequences (bp)": "649123",
        "N50 (bp)": "357339",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "65.7",
        "Number of CDSs": "6024",
        "Average Protein Length": "310.7",
        "Coding Ratio (%)": "91.1",
        "Number of rRNAs": "3",
        "Number of tRNAs": "51",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Mycolicibacterium tusciae",
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                "relation_to_type": "type",
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            },
            {
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                "accession": "GCA_010728925.1",
                "taxid": 1794,
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                "relation_to_type": "type",
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                "ani_threshold": 95,
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                "ani_threshold": 95,
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            },
            {
                "organism_name": "Mycolicibacterium rutilum",
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                "accession": "GCA_900108565.1",
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                "species_taxid": 370526,
                "relation_to_type": "type",
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                "matched_fragments": 1147,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycolicibacterium phlei",
                "strain": "strain=DSM 43239 = CCUG 21000",
                "accession": "GCA_001582015.1",
                "taxid": 1771,
                "species_taxid": 1771,
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                "validated": true,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Mycobacterium lehmannii",
                "strain": "strain=CECT 8763",
                "accession": "GCA_002245535.1",
                "taxid": 2048550,
                "species_taxid": 2048550,
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                "ani": 80.8354,
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                "total_fragments": 2023,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycolicibacterium pulveris",
                "strain": "strain=JCM 6370",
                "accession": "GCA_010725725.1",
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                "species_taxid": 36813,
                "relation_to_type": "type",
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                "matched_fragments": 1021,
                "total_fragments": 2023,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycolicibacterium elephantis",
                "strain": "strain=DSM 44368",
                "accession": "GCA_004014805.1",
                "taxid": 81858,
                "species_taxid": 81858,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1028,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Mycolicibacterium agri",
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                "accession": "GCA_010722915.1",
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                "species_taxid": 36811,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 985,
                "total_fragments": 2023,
                "ani_threshold": 95,
                "status": "below_threshold"
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        ],
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            "contamination": 0.0,
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                "accession": "GCF_002086795.1",
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                "total_fragments": 2023,
                "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Mycobacteriales;f__Mycobacteriaceae;g__Mycobacterium",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
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        ]
    },
    "_bac2feature": {
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        "bacillus_cell_shape": null,
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    },
    "_genome_taxon": [
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        "tusciae"
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    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}