{ "type": "genome", "identifier": "GCF_002087975.1", "organism": "Staphylococcus epidermidis", "title": "Staphylococcus epidermidis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Loyola University Chicago", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002087975.1", "bioproject": "PRJNA224116", "biosample": "SAMN06624123", "wgs_master": "NARC00000000.1", "refseq_category": "na", "taxid": "1282", "species_taxid": "1282", "organism_name": "Staphylococcus epidermidis", "infraspecific_name": "strain=ATCC 14990", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/04/12", "asm_name": "ASM208797v1", "asm_submitter": "Loyola University Chicago", "gbrs_paired_asm": "GCA_002087975.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/087/975/GCF_002087975.1_ASM208797v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2457519", "genome_size_ungapped": "2455621", "gc_percent": "32.000000", "replicon_count": "2", "scaffold_count": "37", "contig_count": "37", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002087975.1-RS_2024_04_06", "annotation_date": "2024-04-06", "total_gene_count": "2379", "protein_coding_gene_count": "2223", "non_coding_gene_count": "79", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-04-12", "dateModified": "2017-04-12", "datePublished": "2017-04-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Staphylococcus epidermidis" ], "sample_taxid": [ "1282" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "not applicable" ], "sample_host_location_id": [], "data_size": "0.685 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2457519", "Number of Sequences": "37", "Longest Sequences (bp)": "749904", "N50 (bp)": "180848", "Gap Ratio (%)": "0.077273", "GCcontent (%)": "32.1", "Number of CDSs": "2272", "Average Protein Length": "299.3", "Coding Ratio (%)": "83.0", "Number of rRNAs": "6", "Number of tRNAs": "59", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Staphylococcus epidermidis", "strain": "strain=ATCC 14990", "accession": "GCA_002087975.1", "taxid": 1282, "species_taxid": 1282, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 801, "total_fragments": 802, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Staphylococcus epidermidis", "strain": "strain=NBRC 100911", "accession": "GCA_006742205.1", "taxid": 1282, "species_taxid": 1282, "relation_to_type": "type", "validated": true, "ani": 99.9931, "matched_fragments": 782, "total_fragments": 802, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Staphylococcus epidermidis", "strain": "strain=NCTC11047", "accession": "GCA_900458605.1", "taxid": 1282, "species_taxid": 1282, "relation_to_type": "type", "validated": true, "ani": 99.9927, "matched_fragments": 798, "total_fragments": 802, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Staphylococcus epidermidis", "strain": "strain=ATCC 14990", "accession": "GCA_006094375.1", "taxid": 1282, "species_taxid": 1282, "relation_to_type": "type", "validated": true, "ani": 99.9892, "matched_fragments": 800, "total_fragments": 802, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Staphylococcus 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