{ "type": "genome", "identifier": "GCF_002088235.1", "organism": "Oceanococcus atlanticus", "title": "Oceanococcus atlanticus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The Third Institute of State Oceanic Administration (SOA)", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002088235.1", "bioproject": "PRJNA224116", "biosample": "SAMN03097562", "wgs_master": "AQQV00000000.1", "refseq_category": "reference genome", "taxid": "1317117", "species_taxid": "1317117", "organism_name": "Oceanococcus atlanticus", "infraspecific_name": "strain=22II-S10r2", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/04/12", "asm_name": "ASM208823v1", "asm_submitter": "The Third Institute of State Oceanic Administration (SOA)", "gbrs_paired_asm": "GCA_002088235.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/088/235/GCF_002088235.1_ASM208823v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3652004", "genome_size_ungapped": "3652004", "gc_percent": "60.500000", "replicon_count": "0", "scaffold_count": "14", "contig_count": "14", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002088235.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "3349", "protein_coding_gene_count": "3286", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-04-12", "dateModified": "2017-04-12", "datePublished": "2017-04-12", "_annotation": { "sample_count": 1, "sample_organism": [ "Oceanococcus atlanticus" ], "sample_taxid": [ "1317117" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Atlantic Ocean" ], "sample_host_location_id": [], "data_size": "1.022 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3652004", "Number of Sequences": "14", "Longest Sequences (bp)": "1580748", "N50 (bp)": "859326", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.6", "Number of CDSs": "3285", "Average Protein Length": "345.0", "Coding Ratio (%)": "93.1", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Oceanococcus atlanticus", "strain": "strain=22II-S10r2", "accession": "GCA_002088235.1", "taxid": 1317117, "species_taxid": 1317117, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1208, "total_fragments": 1210, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Abyssibacter profundi", "strain": "strain=OUC007", "accession": "GCA_003151135.1", "taxid": 2182787, "species_taxid": 2182787, "relation_to_type": "type", "validated": true, "ani": 77.1157, "matched_fragments": 109, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquisalimonas asiatica", "strain": "strain=CGMCC 1.6291", "accession": "GCA_900110585.1", "taxid": 406100, "species_taxid": 406100, "relation_to_type": "type", "validated": true, "ani": 77.035, "matched_fragments": 62, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylonatrum kenyense", "strain": "strain=AMT 1", "accession": "GCA_023195885.1", "taxid": 455253, "species_taxid": 455253, "relation_to_type": "type", "validated": true, "ani": 76.6045, "matched_fragments": 57, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Solimonas aquatica", "strain": "strain=DSM 25927", "accession": "GCA_900111015.1", "taxid": 489703, "species_taxid": 489703, "relation_to_type": "type", "validated": true, "ani": 76.546, "matched_fragments": 126, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nevskia soli", "strain": "strain=DSM 19509", "accession": "GCA_000711955.1", "taxid": 418856, "species_taxid": 418856, "relation_to_type": "type", "validated": true, "ani": 76.4968, "matched_fragments": 137, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas oryzae", "strain": "strain=KCTC 32247", "accession": "GCA_900104805.1", "taxid": 1392877, "species_taxid": 1392877, "relation_to_type": "type", "validated": true, "ani": 76.4964, "matched_fragments": 104, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfurivermis fontis", "strain": "strain=JG42", "accession": "GCA_004001245.1", "taxid": 1972068, "species_taxid": 1972068, "relation_to_type": "type", "validated": true, "ani": 76.4476, "matched_fragments": 75, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas terrae", "strain": "strain=R29", "accession": "GCA_006265115.1", "taxid": 2546226, "species_taxid": 2546226, "relation_to_type": "type", "validated": true, "ani": 76.4285, "matched_fragments": 58, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas germanica", "strain": "strain=FIT28", "accession": "GCA_019614655.1", "taxid": 2815720, "species_taxid": 2815720, "relation_to_type": "type", "validated": true, "ani": 76.4057, "matched_fragments": 54, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Solimonas marina", "strain": "strain=C16B3", "accession": "GCA_012241385.1", "taxid": 2714601, "species_taxid": 2714601, "relation_to_type": "type", "validated": true, "ani": 76.3907, "matched_fragments": 124, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stenotrophomonas maltophilia", "strain": "strain=NBRC 14161", "accession": "GCA_001591205.1", "taxid": 40324, "species_taxid": 40324, "relation_to_type": "type", "validated": true, "ani": 76.2193, "matched_fragments": 72, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stenotrophomonas maltophilia", "strain": "strain=NCTC10257", "accession": "GCA_900186865.1", "taxid": 40324, "species_taxid": 40324, "relation_to_type": "type", "validated": true, "ani": 76.2144, "matched_fragments": 77, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stenotrophomonas maltophilia", "strain": "strain=MTCC 434", "accession": "GCA_000597745.1", "taxid": 40324, "species_taxid": 40324, "relation_to_type": "type", "validated": true, "ani": 76.1793, "matched_fragments": 75, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas composti", "strain": "strain=TR7-09", "accession": "GCA_000747175.1", "taxid": 370776, "species_taxid": 370776, "relation_to_type": "type", "validated": true, "ani": 76.178, "matched_fragments": 60, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Stenotrophomonas maltophilia", "strain": "strain=ATCC 13637", "accession": "GCA_001997185.1", "taxid": 40324, "species_taxid": 40324, "relation_to_type": "type", "validated": true, "ani": 76.174, "matched_fragments": 77, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas tianxiuensis", "strain": "strain=BC-M4-5", "accession": "GCA_009834345.1", "taxid": 2497861, "species_taxid": 2497861, "relation_to_type": "type", "validated": true, "ani": 76.1525, "matched_fragments": 68, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Salinisphaera japonica", "strain": "strain=YTM-1", "accession": "GCA_003788585.1", "taxid": 1304270, "species_taxid": 1304270, "relation_to_type": "type", "validated": true, "ani": 76.1228, "matched_fragments": 66, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Arenimonas composti", "strain": "strain=DSM 18010", "accession": "GCA_000426365.1", "taxid": 370776, "species_taxid": 370776, "relation_to_type": "type", "validated": true, "ani": 76.0378, "matched_fragments": 64, "total_fragments": 1210, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas sessilinigenes", "strain": "strain=CMR12a", "accession": "GCA_019139855.1", "taxid": 658629, "species_taxid": 658629, "relation_to_type": "type", "validated": true, "ani": 75.9408, 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"min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002683405.1", "gtdb_species": "s__GCA-2683405 sp002683405", "ani": 76.7201, "matched_fragments": 91, "total_fragments": 1210, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Nevskiales;f__Salinisphaeraceae;g__GCA-2683405", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_019192445.1", "gtdb_species": "s__MS8 sp019192445", "ani": 76.7111, "matched_fragments": 75, "total_fragments": 1210, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Nevskiales;f__Oceanococcaceae;g__MS8", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": 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