{ "type": "genome", "identifier": "GCF_002088935.1", "organism": "Henriciella litoralis", "title": "Henriciella litoralis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Second Institute of Oceanography, State Oceanic Administration", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002088935.1", "bioproject": "PRJNA224116", "biosample": "SAMN06670198", "wgs_master": "NCSS00000000.1", "refseq_category": "reference genome", "taxid": "568102", "species_taxid": "568102", "organism_name": "Henriciella litoralis", "infraspecific_name": "strain=DSM 22014", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/04/13", "asm_name": "ASM208893v1", "asm_submitter": "Second Institute of Oceanography, State Oceanic Administration", "gbrs_paired_asm": "GCA_002088935.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/088/935/GCF_002088935.1_ASM208893v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3775089", "genome_size_ungapped": "3775025", "gc_percent": "59.000000", "replicon_count": "0", "scaffold_count": "6", "contig_count": "6", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002088935.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "3679", "protein_coding_gene_count": "3609", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-04-13", "dateModified": "2017-04-13", "datePublished": "2017-04-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Henriciella litoralis" ], "sample_taxid": [ "568102" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea: Yellow Sea" ], "sample_host_location_id": [], "data_size": "1.064 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3775089", "Number of Sequences": "6", "Longest Sequences (bp)": "3042077", "N50 (bp)": "3042077", "Gap Ratio (%)": "0.001695", "GCcontent (%)": "58.9", "Number of CDSs": "3669", "Average Protein Length": "312.3", "Coding Ratio (%)": "91.1", "Number of rRNAs": "3", "Number of tRNAs": "43", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Henriciella litoralis", "strain": "strain=DSM 22014", "accession": "GCA_002088935.1", "taxid": 568102, "species_taxid": 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Henriciella barbarensis", "strain": "strain=CCUG66934", "accession": "GCA_003576345.1", "taxid": 86342, "species_taxid": 86342, "relation_to_type": "type", "validated": true, "ani": 79.0659, "matched_fragments": 478, "total_fragments": 1255, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyphomonas polymorpha", "strain": "strain=PS728", "accession": "GCA_000685315.1", "taxid": 74319, "species_taxid": 74319, "relation_to_type": "type", "validated": true, "ani": 77.0952, "matched_fragments": 205, "total_fragments": 1255, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphingomonas changnyeongensis", "strain": "strain=C33", "accession": "GCA_009913435.1", "taxid": 2698679, "species_taxid": 2698679, "relation_to_type": "type", "validated": true, "ani": 76.1785, "matched_fragments": 50, "total_fragments": 1255, "ani_threshold": 95, "status": "below_threshold" }, { 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