{ "type": "genome", "identifier": "GCF_002088975.1", "organism": "Henriciella aquimarina", "title": "Henriciella aquimarina", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Second Institute of Oceanography, State Oceanic Administration", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002088975.1", "bioproject": "PRJNA224116", "biosample": "SAMN06670197", "wgs_master": "NCST00000000.1", "refseq_category": "reference genome", "taxid": "545261", "species_taxid": "545261", "organism_name": "Henriciella aquimarina", "infraspecific_name": "strain=LMG 24711", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/04/13", "asm_name": "ASM208897v1", "asm_submitter": "Second Institute of Oceanography, State Oceanic Administration", "gbrs_paired_asm": "GCA_002088975.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/088/975/GCF_002088975.1_ASM208897v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4335829", "genome_size_ungapped": "4335829", "gc_percent": "62.000000", "replicon_count": "0", "scaffold_count": "132", "contig_count": "132", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002088975.1-RS_2024_12_09", "annotation_date": "2024-12-09", "total_gene_count": "4270", "protein_coding_gene_count": "4149", "non_coding_gene_count": "50", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-04-13", "dateModified": "2017-04-13", "datePublished": "2017-04-13", "_annotation": { "sample_count": 1, "sample_organism": [ "Henriciella aquimarina" ], "sample_taxid": [ "545261" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Indian Ocean" ], "sample_host_location_id": [], "data_size": "1.204 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4335829", "Number of Sequences": "132", "Longest Sequences (bp)": "262803", "N50 (bp)": "83821", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.2", "Number of CDSs": "4140", "Average Protein Length": "308.1", "Coding Ratio (%)": "88.2", "Number of rRNAs": "3", "Number of tRNAs": "44", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Henriciella aquimarina", "strain": "strain=LMG 24711", "accession": "GCA_002088975.1", "taxid": 545261, "species_taxid": 545261, 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"ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Henriciella barbarensis", "strain": "strain=CCUG66934", "accession": "GCA_003576345.1", "taxid": 86342, "species_taxid": 86342, "relation_to_type": "type", "validated": true, "ani": 79.2596, "matched_fragments": 472, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyphomonas oceanitis", "strain": "strain=SCH89", "accession": "GCA_000685295.1", "taxid": 81033, "species_taxid": 81033, "relation_to_type": "type", "validated": true, "ani": 77.9213, "matched_fragments": 308, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Hyphomonas adhaerens", "strain": "strain=MHS-3", "accession": "GCA_000685235.1", "taxid": 81029, "species_taxid": 81029, "relation_to_type": "type", "validated": true, "ani": 77.7721, "matched_fragments": 298, "total_fragments": 1373, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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