{ "type": "genome", "identifier": "GCF_002091495.1", "organism": "Ectopseudomonas alcaliphila NBRC 102411", "title": "Ectopseudomonas alcaliphila NBRC 102411", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002091495.1", "bioproject": "PRJNA224116", "biosample": "SAMD00046923", "wgs_master": "BCZV00000000.1", "refseq_category": "na", "taxid": "1215093", "species_taxid": "101564", "organism_name": "Ectopseudomonas alcaliphila NBRC 102411", "infraspecific_name": "strain=NBRC 102411", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/04/03", "asm_name": "ASM209149v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_002091495.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/091/495/GCF_002091495.1_ASM209149v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5327273", "genome_size_ungapped": "5327273", "gc_percent": "63.000000", "replicon_count": "0", "scaffold_count": "29", "contig_count": "29", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002091495.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "5068", "protein_coding_gene_count": "4966", "non_coding_gene_count": "67", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-04-03", "dateModified": "2017-04-03", "datePublished": "2017-04-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Ectopseudomonas alcaliphila NBRC 102411" ], "sample_taxid": [ "1215093" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.477 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5327273", "Number of Sequences": "29", "Longest Sequences (bp)": "763223", "N50 (bp)": "454770", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "62.9", "Number of CDSs": "4992", "Average Protein Length": "316.6", "Coding Ratio (%)": "89.0", "Number of rRNAs": "2", "Number of tRNAs": "64", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas alcaliphila", "strain": "strain=NBRC 102411", "accession": "GCA_002091495.1", "taxid": 101564, "species_taxid": 101564, 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92.2313, "matched_fragments": 1463, "total_fragments": 1762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas chengduensis", "strain": "strain=DSM 26382", "accession": "GCA_012986985.1", "taxid": 489632, "species_taxid": 489632, "relation_to_type": "type", "validated": true, "ani": 92.1343, "matched_fragments": 1444, "total_fragments": 1762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas chengduensis", "strain": "strain=DSM 26382", "accession": "GCA_900102635.1", "taxid": 489632, "species_taxid": 489632, "relation_to_type": "type", "validated": true, "ani": 92.0774, "matched_fragments": 1447, "total_fragments": 1762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas chengduensis", "strain": "strain=MBR", "accession": "GCA_017905455.1", "taxid": 489632, "species_taxid": 489632, "relation_to_type": "type", "validated": true, "ani": 92.0763, "matched_fragments": 1440, "total_fragments": 1762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas sihuiensis", "strain": "strain=KCTC 32246", "accession": "GCA_900106015.1", "taxid": 1274359, "species_taxid": 1274359, "relation_to_type": "type", "validated": true, "ani": 91.9869, "matched_fragments": 1436, "total_fragments": 1762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas oleovorans subsp. oleovorans", "strain": "strain=DSM 1045", "accession": "GCA_002197815.1", "taxid": 1218129, "species_taxid": 301, "relation_to_type": "type", "validated": true, "ani": 90.6922, "matched_fragments": 1177, "total_fragments": 1762, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas oleovorans subsp. oleovorans", "strain": "strain=NBRC 13583", "accession": "GCA_002091815.1", "taxid": 1218129, "species_taxid": 301, "relation_to_type": "type", "validated": true, "ani": 90.6547, "matched_fragments": 1189, 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