{ "type": "genome", "identifier": "GCF_002091515.1", "organism": "Pseudomonas azotoformans NBRC 12693", "title": "Pseudomonas azotoformans NBRC 12693", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002091515.1", "bioproject": "PRJNA224116", "biosample": "SAMD00046924", "wgs_master": "BCZW00000000.1", "refseq_category": "na", "taxid": "1215094", "species_taxid": "47878", "organism_name": "Pseudomonas azotoformans NBRC 12693", "infraspecific_name": "strain=NBRC 12693", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/04/03", "asm_name": "ASM209151v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_002091515.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/091/515/GCF_002091515.1_ASM209151v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6683742", "genome_size_ungapped": "6683742", "gc_percent": "61.000000", "replicon_count": "0", "scaffold_count": "50", "contig_count": "50", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002091515.1-RS_2024_08_26", "annotation_date": "2024-08-26", "total_gene_count": "6092", "protein_coding_gene_count": "5940", "non_coding_gene_count": "65", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-04-03", "dateModified": "2017-04-03", "datePublished": "2017-04-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas azotoformans NBRC 12693" ], "sample_taxid": [ "1215094" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.870 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6683742", "Number of Sequences": "50", "Longest Sequences (bp)": "666269", "N50 (bp)": "348130", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "61.0", "Number of CDSs": "5977", "Average Protein Length": "334.2", "Coding Ratio (%)": "89.7", "Number of rRNAs": "2", "Number of tRNAs": "61", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas azotoformans", "strain": "strain=NBRC 12693", "accession": "GCA_002091515.1", "taxid": 47878, "species_taxid": 47878, 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"status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900103345.1", "gtdb_species": "s__Pseudomonas_E azotoformans", "ani": 99.9989, "matched_fragments": 2206, "total_fragments": 2207, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.97", "min_intra_species_ani": "95.87", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.87", "num_clustered_genomes": 9, "status": "conclusive" }, { "accession": "GCF_001870465.1", "gtdb_species": "s__Pseudomonas_E extremorientalis", "ani": 94.2625, "matched_fragments": 1847, "total_fragments": 2207, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.37", 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