{ "type": "genome", "identifier": "GCF_002091575.1", "organism": "Pseudomonas flavescens NBRC 103044", "title": "Pseudomonas flavescens NBRC 103044", "description": "na", "data type": "Genome sequencing and assembly", "organization": "National Institute of Technology and Evaluation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002091575.1", "bioproject": "PRJNA224116", "biosample": "SAMD00046926", "wgs_master": "BCZZ00000000.1", "refseq_category": "reference genome", "taxid": "1215099", "species_taxid": "29435", "organism_name": "Pseudomonas flavescens NBRC 103044", "infraspecific_name": "strain=NBRC 103044", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/04/03", "asm_name": "ASM209157v1", "asm_submitter": "National Institute of Technology and Evaluation", "gbrs_paired_asm": "GCA_002091575.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/091/575/GCF_002091575.1_ASM209157v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5849540", "genome_size_ungapped": "5849540", "gc_percent": "63.500000", "replicon_count": "0", "scaffold_count": "63", "contig_count": "63", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002091575.1-RS_2024_08_12", "annotation_date": "2024-08-12", "total_gene_count": "5407", "protein_coding_gene_count": "5266", "non_coding_gene_count": "63", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-04-03", "dateModified": "2017-04-03", "datePublished": "2017-04-03", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudomonas flavescens NBRC 103044" ], "sample_taxid": [ "1215099" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.624 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5849540", "Number of Sequences": "63", "Longest Sequences (bp)": "442682", "N50 (bp)": "207323", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "63.5", "Number of CDSs": "5324", "Average Protein Length": "322.6", "Coding Ratio (%)": "88.1", "Number of rRNAs": "3", "Number of tRNAs": "57", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudomonas flavescens", "strain": "strain=NBRC 103044", "accession": "GCA_002091575.1", "taxid": 29435, "species_taxid": 29435, 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86.2657, "matched_fragments": 1299, "total_fragments": 1922, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas punonensis", "strain": "strain=CECT 8089", "accession": "GCA_900142655.1", "taxid": 1220495, "species_taxid": 1220495, "relation_to_type": "type", "validated": true, "ani": 85.575, "matched_fragments": 1276, "total_fragments": 1922, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas lalucatii", "strain": "strain=R1b54", "accession": "GCA_018398425.1", "taxid": 1424203, "species_taxid": 1424203, "relation_to_type": "type", "validated": true, "ani": 82.3989, "matched_fragments": 837, "total_fragments": 1922, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas guguanensis", "strain": "strain=JCM 18416", "accession": "GCA_900104265.1", "taxid": 1198456, "species_taxid": 1198456, "relation_to_type": "type", "validated": true, "ani": 82.0024, "matched_fragments": 902, 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"min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003253735.1", "gtdb_species": "s__Pseudomonas_E sp003253735", "ani": 86.3018, "matched_fragments": 1305, "total_fragments": 1922, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.17", "min_intra_species_ani": "98.17", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.95", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_900113905.1", "gtdb_species": "s__Pseudomonas_E argentinensis", "ani": 86.2955, "matched_fragments": 1279, "total_fragments": 1922, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", 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"min_intra_species_ani": "99.16", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.92", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.222, "cell_length": 0.204, "doubling_h": -0.025, "growth_tmp": 29.0, "optimum_tmp": 27.972, "optimum_ph": 7.258, "genome_size": 5855660.0, "gc_content": 60.938, "coding_genes": 5204.79, "rRNA16S_genes": 5.319, "tRNA_genes": 67.35, "gram_stain": 0.0, "sporulation": 0.013, "motility": 0.975, "range_salinity": 0.666, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 0.926, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.073, "bacillus_cell_shape": 0.988, "coccus_cell_shape": 0.011, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Pseudomonas", "flavescens", "NBRC", "103044" ], "quality": 4, "quality_label": 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