{ "type": "genome", "identifier": "GCF_002093115.1", "organism": "Geothermobacter hydrogeniphilus", "title": "Geothermobacter hydrogeniphilus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Southern California", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002093115.1", "bioproject": "PRJNA224116", "biosample": "SAMN06608517", "wgs_master": "NAAD00000000.1", "refseq_category": "reference genome", "taxid": "1969733", "species_taxid": "1969733", "organism_name": "Geothermobacter hydrogeniphilus", "infraspecific_name": "strain=EPR-M", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/04/17", "asm_name": "ASM209311v1", "asm_submitter": "University of Southern California", "gbrs_paired_asm": "GCA_002093115.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/093/115/GCF_002093115.1_ASM209311v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3730045", "genome_size_ungapped": "3730045", "gc_percent": "59.500000", "replicon_count": "0", "scaffold_count": "59", "contig_count": "59", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002093115.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "3389", "protein_coding_gene_count": "3290", "non_coding_gene_count": "60", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-04-17", "dateModified": "2017-04-17", "datePublished": "2017-04-17", "_annotation": { "sample_count": 1, "sample_organism": [ "Geothermobacter hydrogeniphilus" ], "sample_taxid": [ "1969733" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Pacific Ocean: East Pacific Rise" ], "sample_host_location_id": [], "data_size": "1.045 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3730045", "Number of Sequences": "59", "Longest Sequences (bp)": "396234", "N50 (bp)": "140284", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "59.4", "Number of CDSs": "3343", "Average Protein Length": "324.9", "Coding Ratio (%)": "87.4", "Number of rRNAs": "6", "Number of tRNAs": "52", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Geothermobacter hydrogeniphilus", "strain": "strain=EPR-M", "accession": "GCA_002093115.1", "taxid": 1969733, 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104, "total_fragments": 1212, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geoalkalibacter subterraneus", "strain": "strain=Red1", "accession": "GCA_000827125.1", "taxid": 483547, "species_taxid": 483547, "relation_to_type": "type", "validated": true, "ani": 77.0238, "matched_fragments": 153, "total_fragments": 1212, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Syntrophotalea acetylenivorans", "strain": "strain=SFB93", "accession": "GCA_001887775.1", "taxid": 1842532, "species_taxid": 1842532, "relation_to_type": "type", "validated": true, "ani": 76.8685, "matched_fragments": 88, "total_fragments": 1212, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Desulfuromonas thiophila", "strain": "strain=DSM 8987", "accession": "GCA_900101955.1", "taxid": 57664, "species_taxid": 57664, "relation_to_type": "type", "validated": true, "ani": 76.8672, "matched_fragments": 131, "total_fragments": 1212, "ani_threshold": 95, 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