{ "type": "genome", "identifier": "GCF_002095315.1", "organism": "Pantoea conspicua", "title": "Pantoea conspicua", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Pretoria", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002095315.1", "bioproject": "PRJNA224116", "biosample": "SAMN05757366", "wgs_master": "MLFN00000000.1", "refseq_category": "reference genome", "taxid": "472705", "species_taxid": "472705", "organism_name": "Pantoea conspicua", "infraspecific_name": "strain=LMG 24534", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/04/18", "asm_name": "ASM209531v1", "asm_submitter": "University of Pretoria", "gbrs_paired_asm": "GCA_002095315.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/095/315/GCF_002095315.1_ASM209531v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4308858", "genome_size_ungapped": "4308858", "gc_percent": "55.500000", "replicon_count": "0", "scaffold_count": "128", "contig_count": "128", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002095315.1-RS_2024_04_22", "annotation_date": "2024-04-22", "total_gene_count": "4125", "protein_coding_gene_count": "3698", "non_coding_gene_count": "64", "pubmed_id": "28255640" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-04-18", "dateModified": "2017-04-18", "datePublished": "2017-04-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Pantoea conspicua" ], "sample_taxid": [ "472705" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "France" ], "sample_host_location_id": [], "data_size": "1.223 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 97.92, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4308858", "Number of Sequences": "128", "Longest Sequences (bp)": "243574", "N50 (bp)": "60215", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "55.6", "Number of CDSs": "4169", "Average Protein Length": "292.8", "Coding Ratio (%)": "85.0", "Number of rRNAs": "4", "Number of tRNAs": "51", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pantoea conspicua", "strain": "strain=LMG 24534", "accession": "GCA_002095315.1", "taxid": 472705, "species_taxid": 472705, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1376, "total_fragments": 1381, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Pantoea agglomerans", "strain": "strain=NBRC 102470", "accession": "GCA_001598475.1", "taxid": 549, "species_taxid": 549, "relation_to_type": "suspected-type", "validated": true, "ani": 86.5478, "matched_fragments": 1129, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pantoea agglomerans", "strain": "strain=FDAARGOS 1447", "accession": "GCA_019048385.1", "taxid": 549, "species_taxid": 549, "relation_to_type": "suspected-type", "validated": true, "ani": 86.5331, "matched_fragments": 1139, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pantoea eucalypti", "strain": "strain=LMG 24197", "accession": "GCA_006494355.1", "taxid": 470933, "species_taxid": 470933, "relation_to_type": "type", "validated": true, "ani": 85.609, "matched_fragments": 1109, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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"GCA_022647325.1", "taxid": 470932, "species_taxid": 470932, "relation_to_type": "type", "validated": true, "ani": 85.3514, "matched_fragments": 1081, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pantoea stewartii subsp. indologenes", "strain": "strain=LMG 2632", "accession": "GCA_000757405.2", "taxid": 66270, "species_taxid": 66269, "relation_to_type": "type", "validated": true, "ani": 81.2134, "matched_fragments": 796, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Erwinia phyllosphaerae", "strain": "strain=CMYE1", "accession": "GCA_019132875.1", "taxid": 2853256, "species_taxid": 2853256, "relation_to_type": "type", "validated": true, "ani": 79.1032, "matched_fragments": 607, "total_fragments": 1381, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Enterobacter wuhouensis", "strain": "strain=WCHEW120002", "accession": "GCA_004331265.1", "taxid": 2529381, 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