# locus_id	locus_tag	location	classification	internal_stop	indel	ref_id	description	query_cov	ref_cov	identity
MGA_18	LOCUS_00160	sequence001:16222..17121(-)	internal_stop_codon	17140..17142(-)		WP_015368669.1	anaerobic C4-dicarboxylate transporter	100.0	69.1	73.6
MGA_19	LOCUS_00170	sequence001:17140..17523(-)	internal_stop_codon	17140..17142(-)		WP_013095257.1	anaerobic C4-dicarboxylate transporter	100.0	29.3	64.6
MGA_34	LOCUS_00320	sequence001:30902..31057(+)	frameshift		30731	WP_002918559.1	50S ribosomal protein L13	100.0	35.9	100.0
MGA_111	LOCUS_01080	sequence001:113262..113780(-)	partial			WP_015704311.1	DUF2501 domain-containing protein	71.5	76.1	46.8
MGA_114	LOCUS_01110	sequence001:116293..117522(+)	partial			WP_001272445.1	type I restriction-modification system specificity subunit	23.2	20.5	89.5
MGA_118	LOCUS_01150	sequence001:123494..123871(+)	partial			WP_050298591.1	DUF1090 domain-containing protein	75.2	73.4	48.9
MGA_126	LOCUS_01230	sequence001:131578..132597(-)	partial			WP_196337679.1	capsular polysaccharide synthesis protein	41.6	43.9	31.9
MGA_129	LOCUS_01260	sequence001:135898..136593(+)	frameshift		136524	WP_195765892.1	LacI family DNA-binding transcriptional regulator	84.8	56.6	61.7
MGA_130	LOCUS_01270	sequence001:136578..136946(+)	frameshift		136524	WP_195765892.1	LacI family DNA-binding transcriptional regulator	93.4	32.7	52.6
MGA_154	LOCUS_01510	sequence001:159603..160484(+)	frameshift		160469	WP_001264707.1	bifunctional aspartate kinase/homoserine dehydrogenase I	99.3	35.5	89.3
MGA_155	LOCUS_01520	sequence001:160544..162064(+)	frameshift		160469	WP_015704333.1	bifunctional aspartate kinase/homoserine dehydrogenase I	100.0	61.7	83.2
MGA_208	LOCUS_02050	sequence001:228949..229215(+)	frameshift		229200	WP_013095574.1	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	92.0	22.9	97.5
MGA_209	LOCUS_02060	sequence001:229212..230006(+)	frameshift		229200	WP_015368246.1	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	95.5	70.8	83.3
MGA_210	LOCUS_02070	sequence001:230077..230979(+)	frameshift		230946	WP_013095575.1	UDP-N-acetylmuramate--L-alanine ligase	96.3	58.9	87.5
MGA_211	LOCUS_02080	sequence001:231063..231551(+)	frameshift		230946	WP_015704402.1	UDP-N-acetylmuramate--L-alanine ligase	99.4	32.8	75.8
MGA_234	LOCUS_02310	sequence001:256446..256640(+)	frameshift		256571	WP_013095598.1	pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase	65.6	6.7	90.5
MGA_235	LOCUS_02320	sequence001:256574..257020(+)	frameshift		256571,257003,257005,257006	WP_013095598.1	pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase	96.6	22.7	69.9
MGA_236	LOCUS_02330	sequence001:257017..258342(+)	frameshift		257002,257005	WP_013095598.1	pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase	97.7	68.3	83.3
MGA_262	LOCUS_02570	sequence002:6184..7287(-)	partial			WP_167355200.1	DUF2817 domain-containing protein	93.7	53.5	43.7
MGA_296	LOCUS_02910	sequence002:35544..35711(+)	frameshift		35663	WP_106515452.1	phytoene desaturase	72.7	8.1	70.0
MGA_298	LOCUS_02930	sequence002:37021..37950(+)	partial			WP_011338116.1	phytoene/squalene synthase family protein	83.2	72.4	36.4
MGA_313	LOCUS_03080	sequence002:51519..51755(-)	frameshift		51775	WP_013095418.1	DeoR/GlpR family DNA-binding transcription regulator	73.1	22.3	64.9
MGA_314	LOCUS_03090	sequence002:51946..52878(+)	partial			WP_005619360.1	MFS transporter	92.6	74.9	48.1
MGA_321	LOCUS_03160	sequence002:57193..57711(-)	frameshift		57662	WP_164930106.1	methyltransferase domain-containing protein	99.4	66.4	52.9
MGA_322	LOCUS_03170	sequence002:57660..57941(-)	frameshift		57665	WP_176742118.1	class I SAM-dependent methyltransferase	96.8	36.1	57.8
MGA_323	LOCUS_03180	sequence002:58282..59619(+)	partial			WP_003813609.1	TonB-dependent siderophore receptor	90.8	49.9	24.6
MGA_333	LOCUS_03280	sequence002:67529..67927(-)	partial			WP_013096940.1	LuxR C-terminal-related transcriptional regulator	96.2	62.1	47.2
MGA_345	LOCUS_03400	sequence002:79003..79353(+)	frameshift		79317	WP_000200286.1	AAA family ATPase	86.2	25.1	65.0
MGA_346	LOCUS_03410	sequence002:79479..80201(+)	frameshift		79317	WP_000200287.1	AAA family ATPase	100.0	60.2	78.8
MGA_357	LOCUS_03520	sequence002:89019..89285(-)	frameshift		89296	WP_013097237.1	molybdenum cofactor-independent xanthine hydroxylase subunit HpxD	100.0	25.6	89.8
MGA_358	LOCUS_03530	sequence002:89291..90049(-)	frameshift		89296	WP_013097237.1	molybdenum cofactor-independent xanthine hydroxylase subunit HpxD	98.4	72.1	77.4
MGA_367	LOCUS_03620	sequence002:96123..98051(+)	partial			WP_000919583.1	methyl-accepting chemotaxis protein	48.4	55.5	48.2
MGA_385	LOCUS_03800	sequence002:110485..111036(-)	partial			WP_011729989.1	AraC family transcriptional regulator	95.6	59.4	46.1
MGA_386	LOCUS_03810	sequence002:111435..112082(+)	frameshift		111424,111406	WP_012256276.1	SDR family oxidoreductase	71.6	58.8	40.3
MGA_389	LOCUS_03840	sequence002:113407..114171(-)	frameshift		114200	WP_162304032.1	PLP-dependent aminotransferase family protein	94.9	50.3	44.4
MGA_390	LOCUS_03850	sequence002:114060..114809(-)	frameshift		114206	WP_037400962.1	PLP-dependent aminotransferase family protein	73.1	39.4	39.3
MGA_391	LOCUS_03860	sequence002:115233..116483(+)	partial			WP_011337937.1	EAL domain-containing protein	72.1	36.7	34.1
MGA_404	LOCUS_03990	sequence002:130491..130781(+)	partial			WP_051345837.1	SDR family oxidoreductase	93.8	36.9	42.2
MGA_407	LOCUS_04020	sequence002:133772..134584(-)	partial			WP_011104349.1	sigma 54-interacting transcriptional regulator	99.3	40.9	50.5
MGA_408	LOCUS_04030	sequence002:134563..134940(+)	partial			WP_011267493.1	efflux RND transporter periplasmic adaptor subunit	92.0	31.3	60.9
MGA_409	LOCUS_04040	sequence002:134945..137503(+)	frameshift		137488	WP_011267494.1	efflux RND transporter permease subunit	99.5	81.6	81.6
MGA_410	LOCUS_04050	sequence002:137529..138035(+)	frameshift		137491	WP_011103298.1	efflux RND transporter permease subunit	97.0	15.7	81.6
MGA_414	LOCUS_04090	sequence002:140950..141819(-)	partial			WP_011268504.1	AraC family transcriptional regulator	32.9	32.2	35.8
MGA_417	LOCUS_04120	sequence002:144965..145393(+)	partial			WP_005693713.1	fused PTS fructose transporter subunit IIA/HPr protein	98.6	29.7	40.5
MGA_422	LOCUS_04170	sequence002:148768..149322(-)	frameshift		148772,149375	WP_013097240.1	ABC transporter substrate-binding protein	99.5	53.9	69.9
MGA_423	LOCUS_04180	sequence002:149361..149624(-)	frameshift		149375	WP_013097240.1	ABC transporter substrate-binding protein	83.9	21.9	64.4
MGA_433	LOCUS_04280	sequence002:160415..160756(+)	partial			WP_014206045.1	MFS transporter	61.9	18.5	63.5
MGA_444	LOCUS_04390	sequence002:171609..172310(+)	partial			WP_005481158.1	threonine ammonia-lyase, biosynthetic	99.1	44.9	32.3
MGA_460	LOCUS_04550	sequence002:188322..188498(+)	frameshift,internal_stop_codon	188451..188453(+)	188426	WP_044173324.1	cupin domain-containing protein	60.3	30.7	88.6
MGA_461	LOCUS_04560	sequence002:188501..188665(+)	frameshift,internal_stop_codon	188451..188453(+)	188426	WP_044173324.1	cupin domain-containing protein	94.4	44.7	72.5
MGA_479	LOCUS_04740	sequence002:209228..209674(-)	frameshift		209709	WP_011036278.1	glycoside hydrolase family 15 protein	100.0	23.8	47.0
MGA_480	LOCUS_04750	sequence002:209587..211044(-)	frameshift		209709	WP_011036278.1	glycoside hydrolase family 15 protein	87.6	70.9	53.3
MGA_500	LOCUS_04950	sequence002:238779..238940(+)	frameshift		238910	WP_013096498.1	amino acid ABC transporter permease	94.3	16.0	54.0
MGA_501	LOCUS_04960	sequence002:238904..239704(+)	frameshift		238910	WP_013096498.1	amino acid ABC transporter permease	88.3	75.3	75.3
MGA_504	LOCUS_04990	sequence002:241378..242772(-)	partial			WP_006315771.1	EAL domain-containing protein	60.3	42.7	34.5
MGA_511	LOCUS_05050	sequence003:1183..2577(-)	partial			WP_011229242.1	glycoside hydrolase family 2 TIM barrel-domain containing protein	65.1	47.1	37.0
MGA_512	LOCUS_05060	sequence003:2606..3448(-)	partial			WP_015703911.1	alpha/beta hydrolase-fold protein	90.7	65.5	58.7
MGA_513	LOCUS_05070	sequence003:3633..3971(+)	frameshift		3906,3869	WP_011963497.1	hypothetical protein	69.6	41.7	41.2
MGA_529	LOCUS_05230	sequence003:19400..19726(-)	frameshift		19731	WP_015038729.1	GNAT family N-acetyltransferase	97.2	70.5	51.4
MGA_542	LOCUS_05360	sequence003:32656..33852(-)	frameshift		33875,33380,33455	WP_013225993.1	MDR family MFS transporter	100.0	81.5	34.6
MGA_543	LOCUS_05370	sequence003:33813..34115(-)	frameshift		33875	WP_013225993.1	MDR family MFS transporter	80.0	15.9	53.8
MGA_550	LOCUS_05440	sequence003:40161..40370(-)	frameshift		40498	WP_013096828.1	LysR family transcriptional regulator	73.9	16.9	60.8
MGA_551	LOCUS_05450	sequence003:40490..41056(-)	frameshift		40498	WP_015705289.1	LysR family transcriptional regulator	98.9	62.0	61.8
MGA_573	LOCUS_05670	sequence003:66272..67087(+)	frameshift		66922	WP_013096871.1	amino acid permease	80.1	47.2	77.4
MGA_574	LOCUS_05680	sequence003:66982..67662(+)	frameshift		66922	WP_013096871.1	amino acid permease	96.5	46.7	68.8
MGA_597	LOCUS_05910	sequence003:92031..92690(-)	frameshift		92752	WP_001235493.1	transcriptional regulator TyrR	99.1	42.5	79.8
MGA_598	LOCUS_05920	sequence003:92603..93595(-)	frameshift		92746	WP_005169566.1	transcriptional regulator TyrR	90.0	56.4	65.7
MGA_626	LOCUS_06200	sequence003:124766..125281(-)	frameshift		125319	WP_013096375.1	lipopolysaccharide assembly protein LapB	100.0	44.0	74.3
MGA_627	LOCUS_06210	sequence003:125278..125934(-)	frameshift		125322	WP_000891354.1	lipopolysaccharide assembly protein LapB	94.0	52.7	89.8
MGA_643	LOCUS_06370	sequence003:144423..145004(+)	frameshift,internal_stop_codon	145002..145004(+)	145013	WP_000763511.1	bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD	98.4	35.8	85.8
MGA_644	LOCUS_06380	sequence003:145018..146016(+)	frameshift,internal_stop_codon	145002..145004(+)	145016	WP_000763524.1	bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD	100.0	62.5	77.1
MGA_683	LOCUS_06770	sequence004:6900..9743(-)	partial			WP_037399555.1	EAL domain-containing protein	71.5	72.1	40.9
MGA_715	LOCUS_07090	sequence004:44115..44369(+)	partial			WP_005174115.1	accessory factor UbiK family protein	85.7	70.7	76.4
MGA_734	LOCUS_07280	sequence004:68373..70712(-)	partial			WP_004080141.1	KAP family P-loop domain protein	67.7	74.8	26.2
MGA_742	LOCUS_07360	sequence004:80669..81331(-)	partial			WP_013096445.1	VasL domain-containing protein	94.1	47.7	31.5
MGA_743	LOCUS_07370	sequence004:81214..82023(-)	frameshift		81369,81131,81183	WP_013096445.1	VasL domain-containing protein	85.1	54.8	34.0
MGA_771	LOCUS_07650	sequence004:116101..116649(-)	frameshift		116708	WP_002210264.1	gluconate 5-dehydrogenase	100.0	71.7	78.6
MGA_772	LOCUS_07660	sequence004:116664..116864(-)	frameshift		116714	WP_000998700.1	gluconate 5-dehydrogenase	74.2	19.3	71.4
MGA_783	LOCUS_07770	sequence004:129891..130259(+)	partial			WP_002210415.1	EnvZ/OmpR regulon moderator MzrA	63.1	59.7	45.5
MGA_799	LOCUS_07930	sequence004:142385..142966(-)	frameshift		142998	WP_011707609.1	KDGP aldolase family protein	99.5	78.0	79.7
MGA_800	LOCUS_07940	sequence004:142945..143124(-)	frameshift		142998	WP_000779260.1	KDGP aldolase family protein	76.3	18.3	80.0
MGA_805	LOCUS_07990	sequence004:146982..147260(-)	partial			WP_005174302.1	DUF4312 family protein	71.7	67.3	62.1
MGA_862	LOCUS_08560	sequence005:36023..36367(-)	frameshift		36414	WP_015367112.1	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	97.4	39.2	75.7
MGA_863	LOCUS_08570	sequence005:36349..36879(-)	frameshift		36414	WP_000988253.1	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	92.0	57.2	67.9
MGA_877	LOCUS_08710	sequence005:48894..50024(-)	partial			WP_015705456.1	type VI secretion system-associated FHA domain protein TagH	70.7	47.0	59.2
MGA_879	LOCUS_08730	sequence005:50770..52884(-)	partial			WP_013096178.1	type VI secretion system membrane subunit TssM	95.9	56.3	51.5
MGA_909	LOCUS_09030	sequence005:84266..84472(-)	frameshift		84471	WP_038419918.1	formate-dependent phosphoribosylglycinamide formyltransferase	69.1	12.0	70.2
MGA_910	LOCUS_09040	sequence005:84469..85443(-)	frameshift		84471	WP_015366002.1	formate-dependent phosphoribosylglycinamide formyltransferase	100.0	82.7	82.7
MGA_916	LOCUS_09100	sequence005:90210..90965(-)	partial			WP_062694757.1	glycosyltransferase family 25 protein	74.5	78.9	37.2
MGA_917	LOCUS_09110	sequence005:91656..91940(+)	partial			WP_013096470.1	cold-shock protein	52.1	79.0	67.3
MGA_928	LOCUS_09220	sequence005:100295..100684(+)	frameshift		100582	WP_001091235.1	carboxy terminal-processing peptidase	74.4	14.2	77.3
MGA_929	LOCUS_09230	sequence005:100687..102333(+)	frameshift		100582	WP_013096119.1	carboxy terminal-processing peptidase	99.8	80.2	82.1
MGA_956	LOCUS_09500	sequence005:127543..127950(-)	frameshift		127952,127646	WP_005169220.1	septum site-determining protein MinC	74.8	41.2	67.3
MGA_984	LOCUS_09780	sequence006:20..184(-)	frameshift		195	WP_000730794.1	endonuclease SmrB	100.0	29.5	94.4
MGA_985	LOCUS_09790	sequence006:181..567(-)	frameshift		195	WP_015365539.1	endonuclease SmrB	96.9	68.3	80.0
MGA_987	LOCUS_09810	sequence006:1701..2276(+)	frameshift		2249	WP_000918470.1	chorismate synthase	95.3	50.4	89.6
MGA_988	LOCUS_09820	sequence006:2276..2785(+)	frameshift		2249	WP_015706181.1	chorismate synthase	100.0	46.8	84.0
MGA_1004	LOCUS_09980	sequence006:18342..18683(-)	frameshift		18688	WP_002209722.1	DMT family transporter	94.7	35.1	71.0
MGA_1005	LOCUS_09990	sequence006:18617..19231(-)	frameshift		18688	WP_005171845.1	DMT family transporter	88.7	61.6	65.2
MGA_1011	LOCUS_10050	sequence006:24046..24243(+)	frameshift		24240	WP_002209729.1	acetyl-CoA carboxylase, carboxyltransferase subunit beta	98.5	21.1	92.2
MGA_1012	LOCUS_10060	sequence006:24243..24953(+)	frameshift		24240	WP_000118383.1	acetyl-CoA carboxylase, carboxyltransferase subunit beta	99.6	77.3	88.9
MGA_1025	LOCUS_10190	sequence006:37724..38278(+)	frameshift		38272	WP_015706077.1	RbtT/DalT/CsbX family MFS transporter	98.4	42.4	59.1
MGA_1026	LOCUS_10200	sequence006:38245..39015(+)	frameshift		38272	WP_015706071.1	RbtT/DalT/CsbX family MFS transporter	96.5	58.1	60.7
MGA_1052	LOCUS_10460	sequence006:68488..68808(+)	partial			WP_001242981.1	stress response protein ElaB	71.7	73.8	73.7
MGA_1063	LOCUS_10570	sequence006:86347..87132(+)	partial			WP_013096690.1	HlyD family type I secretion periplasmic adaptor subunit	83.5	55.8	57.8
MGA_1064	LOCUS_10580	sequence006:88009..88683(+)	frameshift		87877	WP_005171545.1	porin OmpC	99.1	60.8	68.3
MGA_1083	LOCUS_10770	sequence006:108960..109355(-)	partial			WP_023619753.1	bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase	98.5	68.3	79.1
MGA_1087	LOCUS_10810	sequence006:112690..112878(+)	partial			WP_015365691.1	YkgJ family cysteine cluster protein	100.0	73.8	72.6
MGA_1093	LOCUS_10860	sequence007:2071..2571(-)	frameshift		2627	WP_015704001.1	IMPACT family protein	99.4	80.9	66.7
MGA_1126	LOCUS_11190	sequence007:35414..36580(-)	frameshift		36750	WP_000383406.1	DNA helicase II	100.0	53.9	89.2
MGA_1127	LOCUS_11200	sequence007:36706..37617(-)	frameshift		36750	WP_011815343.1	DNA helicase II	92.7	39.0	86.1
MGA_1133	LOCUS_11260	sequence007:41226..43097(-)	frameshift		43078	WP_002211468.1	class I adenylate cyclase	99.0	72.5	83.5
MGA_1134	LOCUS_11270	sequence007:42992..43780(-)	frameshift		43078	WP_013099262.1	class I adenylate cyclase	88.9	27.5	80.7
MGA_1159	LOCUS_11520	sequence007:73215..73496(+)	frameshift		73466	WP_103676442.1	alpha/beta hydrolase	82.8	24.8	48.1
MGA_1160	LOCUS_11530	sequence007:73475..74086(+)	frameshift		73466	WP_103676442.1	alpha/beta hydrolase	99.5	65.5	56.2
MGA_1164	LOCUS_11570	sequence007:79593..80537(-)	partial			WP_064254933.1	glycosyl hydrolase family 8	70.7	64.6	40.3
MGA_1168	LOCUS_11610	sequence007:87297..88979(-)	internal_stop_codon	88995..88997(-)		WP_004199785.1	UDP-forming cellulose synthase catalytic subunit	95.2	63.2	51.5
MGA_1169	LOCUS_11620	sequence007:88995..89402(-)	internal_stop_codon	88995..88997(-)		WP_015369239.1	UDP-forming cellulose synthase catalytic subunit	88.9	13.8	40.8
MGA_1170	LOCUS_11630	sequence007:89457..90257(-)	partial			WP_011103389.1	cellulose biosynthesis protein BcsQ	94.0	65.9	30.3
MGA_1230	LOCUS_12220	sequence008:62802..63173(+)	frameshift		63062	WP_005174674.1	aminodeoxychorismate synthase component II	79.7	50.8	71.4
MGA_1231	LOCUS_12230	sequence008:63077..63376(+)	frameshift		63062	WP_005174674.1	aminodeoxychorismate synthase component II	99.0	51.3	74.5
MGA_1251	LOCUS_12430	sequence008:81823..82596(+)	frameshift		81893	WP_085068497.1	FKBP-type peptidyl-prolyl cis-trans isomerase	82.5	78.2	91.5
MGA_1262	LOCUS_12540	sequence009:2330..2614(-)	partial			WP_002213141.1	DNA-binding protein	96.8	48.7	65.9
MGA_1263	LOCUS_12550	sequence009:2834..3475(+)	partial			WP_013385648.1	GMC family oxidoreductase	97.7	39.1	42.6
MGA_1266	LOCUS_12580	sequence009:5756..6016(-)	frameshift,internal_stop_codon	5793..5795(-)	5805	WP_011817098.1	Rpn family recombination-promoting nuclease/putative transposase	53.5	15.0	63.0
MGA_1267	LOCUS_12590	sequence009:6280..6450(+)	partial			WP_011039179.1	DUF2256 domain-containing protein	60.7	66.7	61.8
MGA_1272	LOCUS_12640	sequence009:12202..12828(-)	partial			WP_085929673.1	IS3-like element ISEc52 family transposase	99.5	53.2	96.1
MGA_1276	LOCUS_12680	sequence009:19229..19870(+)	partial			WP_003246321.1	AraC family transcriptional regulator	93.4	74.2	29.6
MGA_1282	LOCUS_12740	sequence009:23352..23603(-)	frameshift,internal_stop_codon	23859..23861(-),23729..23731(-)	23840,23638	WP_013087135.1	Y-family DNA polymerase	97.6	19.1	66.7
MGA_1283	LOCUS_12750	sequence009:25803..25985(-)	internal_stop_codon	26013..26015(-),25803..25805(-),25992..25994(-)		WP_011103211.1	tyrosine-type recombinase/integrase	98.3	8.3	54.2
MGA_1289	LOCUS_12810	sequence009:34842..36170(+)	frameshift		36146	WP_015705092.1	nitrate reductase	99.1	50.0	60.7
MGA_1290	LOCUS_12820	sequence009:36167..37462(+)	frameshift		36146	WP_015705092.1	nitrate reductase	97.9	48.2	49.1
MGA_1291	LOCUS_12830	sequence009:37462..38289(+)	partial			WP_011707782.1	siroheme synthase CysG	90.2	52.6	56.5
MGA_1300	LOCUS_12920	sequence009:46034..46288(+)	partial			WP_004196367.1	NirD/YgiW/YdeI family stress tolerance protein	98.8	61.0	47.0
MGA_1305	LOCUS_12970	sequence009:51418..51654(-)	partial			WP_000457515.1	Y-family DNA polymerase	97.4	18.0	75.0
MGA_1317	LOCUS_13090	sequence009:64354..65310(-)	frameshift		65563,65326	WP_000475506.1	Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC	100.0	69.0	89.0
MGA_1318	LOCUS_13100	sequence009:65307..65501(-)	frameshift		65329,65563	WP_001507116.1	Cu(+)/Ag(+) efflux RND transporter outer membrane channel SilC	98.4	13.7	85.7
MGA_1322	LOCUS_13140	sequence009:69611..69841(-)	partial			WP_001023257.1	copper resistance protein	63.2	33.6	54.0
MGA_1331	LOCUS_13230	sequence009:77074..77472(-)	frameshift		77579	WP_011107043.1	tyrosine-type recombinase/integrase	99.2	18.4	70.2
MGA_1332	LOCUS_13240	sequence009:77472..79163(-)	frameshift		77585	WP_011103211.1	tyrosine-type recombinase/integrase	92.7	73.1	50.8
MGA_1334	LOCUS_13260	sequence009:80220..80456(-)	partial			WP_013087135.1	Y-family DNA polymerase	97.4	17.7	73.7
MGA_1335	LOCUS_13270	sequence009:80459..80665(-)	partial			WP_000457136.1	translesion error-prone DNA polymerase V autoproteolytic subunit	100.0	56.0	57.1
MGA_1338	LOCUS_13300	sequence009:81455..81706(-)	partial			WP_000148285.1	helix-turn-helix transcriptional regulator	73.5	73.5	42.6
MGA_1340	LOCUS_13320	sequence009:83048..83281(+)	partial			WP_013087142.1	hypothetical protein	90.9	45.2	45.7
MGA_1376	LOCUS_13680	sequence010:35653..35949(-)	frameshift		35936	WP_013096915.1	HlyD family secretion protein	93.9	32.2	73.9
MGA_1377	LOCUS_13690	sequence010:35841..36509(-)	frameshift		35936	WP_013096915.1	HlyD family secretion protein	86.0	66.8	58.1
MGA_1384	LOCUS_13760	sequence010:40360..41535(+)	frameshift		41442	WP_001295400.1	tyrosine--tRNA ligase	88.5	81.6	90.5
MGA_1385	LOCUS_13770	sequence010:41442..41675(+)	frameshift		41442	WP_002210960.1	tyrosine--tRNA ligase	98.7	17.9	77.6
MGA_1421	LOCUS_14130	sequence010:82406..82867(+)	partial			WP_002214288.1	ribonuclease domain-containing protein	72.5	70.7	68.5
MGA_1430	LOCUS_14210	sequence011:3120..4781(+)	partial			WP_005176365.1	signal recognition particle-docking protein FtsY	57.1	62.3	88.0
MGA_1445	LOCUS_14360	sequence011:18500..18796(-)	partial			WP_000825996.1	DUF2756 family protein	95.9	66.4	36.1
MGA_1446	LOCUS_14370	sequence011:19016..20515(+)	frameshift		20458	WP_013099121.1	gamma-glutamyltransferase	92.4	79.2	80.5
MGA_1447	LOCUS_14380	sequence011:20485..20748(+)	frameshift		20458	WP_000595064.1	gamma-glutamyltransferase	100.0	15.0	86.2
MGA_1458	LOCUS_14490	sequence011:31835..32035(+)	frameshift		31981	WP_001128110.1	MATE family efflux transporter DinF	74.2	11.1	85.7
MGA_1459	LOCUS_14500	sequence011:32032..33156(+)	frameshift		31981	WP_001295692.1	MATE family efflux transporter DinF	99.7	84.6	66.0
MGA_1473	LOCUS_14640	sequence011:44862..46070(-)	frameshift		46144	WP_015368747.1	excinuclease ABC subunit UvrA	99.8	42.6	88.5
MGA_1474	LOCUS_14650	sequence011:46097..46732(-)	frameshift		46144,46143,46863	WP_013095069.1	excinuclease ABC subunit UvrA	94.3	21.2	86.4
MGA_1475	LOCUS_14660	sequence011:46672..47688(-)	frameshift		46863	WP_013095069.1	excinuclease ABC subunit UvrA	81.1	29.1	93.8
MGA_1478	LOCUS_14690	sequence011:51204..51599(-)	partial			WP_086025310.1	IS3-like element ISYpe1 family transposase	100.0	36.1	51.5
MGA_1486	LOCUS_14770	sequence011:58382..59812(+)	frameshift		59728	WP_001536604.1	Na+/H+ antiporter	93.9	81.6	78.1
MGA_1487	LOCUS_14780	sequence011:59737..60030(+)	frameshift		59728	WP_000402206.1	Na+/H+ antiporter	81.4	14.4	72.2
MGA_1489	LOCUS_14800	sequence011:61160..61480(+)	partial			WP_000257347.1	CidA/LrgA family protein	92.5	72.1	63.3
MGA_1497	LOCUS_14880	sequence011:70081..71013(+)	frameshift		70929	WP_001074155.1	PTS N-acetylmuramic acid transporter subunit IIBC	92.6	60.5	59.9
MGA_1498	LOCUS_14890	sequence011:70944..71513(+)	frameshift		70929	WP_011817229.1	PTS N-acetylmuramic acid transporter subunit IIBC	99.5	38.9	80.3
MGA_1511	LOCUS_15020	sequence012:2029..2766(-)	frameshift		2789	WP_005477808.1	BCCT family transporter	95.5	42.3	62.4
MGA_1512	LOCUS_15030	sequence012:2763..3686(-)	frameshift		2792	WP_005477808.1	BCCT family transporter	94.5	52.4	69.0
MGA_1576	LOCUS_15670	sequence012:63474..63731(-)	partial			WP_000208085.1	biofilm/acid-resistance regulator YmgB/AriR	71.8	74.4	52.5
MGA_1582	LOCUS_15730	sequence012:66723..67661(-)	frameshift		67684	WP_013096959.1	diguanylate phosphodiesterase	99.4	76.4	62.3
MGA_1583	LOCUS_15740	sequence012:67577..67933(-)	frameshift		67684	WP_013096959.1	diguanylate phosphodiesterase	70.3	20.4	62.7
MGA_1599	LOCUS_15900	sequence012:77789..78088(+)	frameshift		78022	WP_001087467.1	RNA polymerase sigma factor FliA	78.8	32.6	97.4
MGA_1600	LOCUS_15910	sequence012:78022..78510(+)	frameshift		78022	WP_002211153.1	RNA polymerase sigma factor FliA	97.5	65.8	85.4
MGA_1635	LOCUS_16260	sequence013:29998..30714(+)	frameshift		30594	WP_013096703.1	efflux transporter outer membrane subunit	80.3	41.8	50.5
MGA_1636	LOCUS_16270	sequence013:30630..31370(+)	frameshift		30594	WP_015705601.1	efflux transporter outer membrane subunit	98.8	52.7	66.3
MGA_1667	LOCUS_16580	sequence013:57712..58680(+)	frameshift		58677	WP_034888230.1	flagellar hook protein FlgE	100.0	80.6	65.2
MGA_1681	LOCUS_16720	sequence013:72567..73277(+)	frameshift		73262	WP_000197594.1	phosphate acyltransferase PlsX	97.9	64.9	74.5
MGA_1682	LOCUS_16730	sequence013:73289..73612(+)	frameshift		73262	WP_005170740.1	phosphate acyltransferase PlsX	98.1	29.9	75.2
MGA_1698	LOCUS_16880	sequence014:7789..8484(+)	partial			WP_011816942.1	S-methyl-5-thioribose kinase	97.8	67.2	34.8
MGA_1706	LOCUS_16960	sequence014:16976..17476(+)	frameshift		17380	WP_002208703.1	esterase FrsA	84.3	34.0	59.6
MGA_1707	LOCUS_16970	sequence014:17422..18222(+)	frameshift		17380	WP_000189532.1	esterase FrsA	98.9	63.3	64.3
MGA_1712	LOCUS_17020	sequence014:22858..23589(+)	partial			WP_000858975.1	helix-turn-helix transcriptional regulator	72.8	78.2	41.7
MGA_1732	LOCUS_17220	sequence014:33882..34850(-)	partial			WP_000005791.1	hypothetical protein	46.0	46.0	76.4
MGA_1736	LOCUS_17260	sequence014:35804..36295(-)	partial			WP_011476612.1	ArdC-like ssDNA-binding domain-containing protein	89.6	16.4	21.8
MGA_1778	LOCUS_17680	sequence014:62381..64315(+)	partial			WP_000129924.1	phage head-binding domain-containing protein	20.0	19.4	52.7
MGA_1787	LOCUS_17770	sequence014:72544..73539(+)	partial			WP_011107073.1	glycosyltransferase family 2 protein	61.9	64.3	35.4
MGA_1791	LOCUS_17810	sequence014:78190..78420(-)	frameshift		78467	WP_002211084.1	ATP-dependent RNA helicase DbpA	100.0	16.5	64.5
MGA_1792	LOCUS_17820	sequence014:78453..79568(-)	frameshift		78464	WP_015705625.1	ATP-dependent RNA helicase DbpA	98.9	80.3	67.3
MGA_1829	LOCUS_18190	sequence015:38427..38723(+)	frameshift		38708	WP_000117881.1	asparagine--tRNA ligase	95.9	20.2	86.2
MGA_1830	LOCUS_18200	sequence015:38720..39826(+)	frameshift		38708	WP_002211301.1	asparagine--tRNA ligase	100.0	79.0	88.9
MGA_1859	LOCUS_18490	sequence015:77499..>79140(-)	partial			WP_005171070.1	DNA translocase FtsK	94.1	42.7	85.8
MGA_1861	LOCUS_18500	sequence016:97..624(-)	frameshift		138	WP_001526312.1	exonuclease subunit SbcC	92.6	15.5	77.2
MGA_1908	LOCUS_18970	sequence016:50491..50817(+)	partial			WP_047081000.1	helix-hairpin-helix domain-containing protein	72.2	62.0	62.8
MGA_1915	LOCUS_19040	sequence016:56380..57621(+)	frameshift		57531	WP_015367939.1	SmdA family multidrug ABC transporter permease/ATP-binding protein	93.0	65.2	74.7
MGA_1916	LOCUS_19050	sequence016:57621..58163(+)	frameshift		57531	WP_015367939.1	SmdA family multidrug ABC transporter permease/ATP-binding protein	98.3	29.7	78.5
MGA_1922	LOCUS_19110	sequence016:63515..63826(-)	partial			WP_001300427.1	DNA base-flipping protein	93.2	74.4	70.8
MGA_1941	LOCUS_19290	sequence017:2543..3514(-)	frameshift		3579	WP_002209952.1	Xaa-Pro aminopeptidase	98.5	72.8	78.0
MGA_1942	LOCUS_19300	sequence017:3505..3864(-)	frameshift		3579	WP_001290122.1	Xaa-Pro aminopeptidase	79.0	21.3	78.7
MGA_1950	LOCUS_19380	sequence017:9282..9665(-)	frameshift		9682	WP_005173525.1	oxidative stress defense protein	100.0	50.6	66.1
MGA_1951	LOCUS_19390	sequence017:9656..10015(-)	frameshift		9682	WP_005173525.1	oxidative stress defense protein	90.8	43.8	70.0
MGA_1979	LOCUS_19670	sequence017:56002..56133(+)	frameshift		56118	WP_002215614.1	XTP/dITP diphosphatase	93.0	20.3	90.0
MGA_1980	LOCUS_19680	sequence017:56325..56594(+)	frameshift		56118	WP_015369727.1	XTP/dITP diphosphatase	100.0	45.2	76.4
MGA_1988	LOCUS_19760	sequence017:62450..63022(-)	frameshift		63252	WP_000839789.1	ornithine decarboxylase	99.5	26.6	76.7
MGA_1989	LOCUS_19770	sequence017:62980..64596(-)	frameshift		63252	WP_000839779.1	ornithine decarboxylase	83.3	62.4	72.8
MGA_2016	LOCUS_20040	sequence018:7304..8068(+)	frameshift		8038	WP_011107015.1	relaxase/mobilization nuclease domain-containing protein	96.5	37.7	48.4
MGA_2017	LOCUS_20050	sequence018:8065..9264(+)	frameshift		8038	WP_011107015.1	relaxase/mobilization nuclease domain-containing protein	99.7	60.3	37.3
MGA_2041	LOCUS_20290	sequence018:28121..28621(+)	partial			WP_011269368.1	methyl-accepting chemotaxis protein	85.5	22.5	42.4
MGA_2047	LOCUS_20350	sequence018:33284..33772(+)	frameshift		33655	WP_013097651.1	(S)-acetoin forming diacetyl reductase	81.5	51.6	62.9
MGA_2048	LOCUS_20360	sequence018:33760..34056(+)	frameshift		33655	WP_013097651.1	(S)-acetoin forming diacetyl reductase	100.0	38.3	85.7
MGA_2077	LOCUS_20650	sequence018:61457..61756(+)	partial			WP_000340141.1	hypothetical protein	57.6	60.4	64.4
MGA_2084	LOCUS_20720	sequence018:70501..71103(+)	frameshift,internal_stop_codon	71102..71104(+)	70267	WP_085929673.1	IS3-like element ISEc52 family transposase	100.0	51.4	90.5
MGA_2107	LOCUS_20940	sequence019:17717..18961(-)	frameshift		19011	WP_000428711.1	4-alpha-glucanotransferase	99.3	59.3	64.0
MGA_2108	LOCUS_20950	sequence019:18961..19776(-)	frameshift		19011	WP_000428711.1	4-alpha-glucanotransferase	91.1	35.9	61.4
MGA_2169	LOCUS_21560	sequence020:25416..26246(+)	partial			WP_000068798.1	cell division protein FtsN	40.2	33.6	78.4
MGA_2205	LOCUS_21920	sequence020:59053..59808(+)	partial			WP_165787504.1	O-antigen ligase family protein	90.4	58.1	37.0
MGA_2220	LOCUS_22060	sequence021:3..623(-)	frameshift		670	WP_002210324.1	endolytic peptidoglycan transglycosylase RlpA	95.6	55.3	65.0
MGA_2268	LOCUS_22540	sequence021:50433..50720(+)	partial			WP_020079340.1	succinate dehydrogenase cytochrome b556 subunit	100.0	70.9	71.6
MGA_2281	LOCUS_22670	sequence021:65122..66477(+)	partial			WP_002210737.1	cell envelope integrity protein TolA	30.4	34.8	65.0
MGA_2312	LOCUS_22980	sequence022:29566..30846(+)	frameshift		30693	WP_013099408.1	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	88.3	82.5	83.0
MGA_2324	LOCUS_23100	sequence022:43536..44018(-)	frameshift		44074	WP_011262056.1	type II toxin-antitoxin system HipA family toxin	90.0	32.8	54.2
MGA_2325	LOCUS_23110	sequence022:44027..44689(-)	frameshift		44074,44699	WP_011262056.1	type II toxin-antitoxin system HipA family toxin	90.9	45.3	55.5
MGA_2326	LOCUS_23120	sequence022:44679..44852(-)	frameshift		44681,44675	WP_014538165.1	type II toxin-antitoxin system HipA family toxin	94.7	12.5	48.1
MGA_2340	LOCUS_23260	sequence022:60961..61206(+)	frameshift		61131	WP_000354284.1	MFS transporter	70.4	13.3	82.5
MGA_2341	LOCUS_23270	sequence022:61191..62252(+)	frameshift		61128	WP_161496901.1	MFS transporter	100.0	79.3	86.4
MGA_2345	LOCUS_23290	sequence023:3191..3838(+)	frameshift		3715	WP_013098520.1	two-component sensor histidine kinase BarA	73.0	17.1	59.2
MGA_2346	LOCUS_23300	sequence023:3817..5973(+)	frameshift		3715	WP_000186422.1	two-component sensor histidine kinase BarA	99.6	79.1	61.6
MGA_2382	LOCUS_23660	sequence023:47261..48862(-)	frameshift		48896,48899	WP_000957883.1	phosphoenolpyruvate--protein phosphotransferase	97.4	69.4	77.6
MGA_2383	LOCUS_23670	sequence023:48897..49505(-)	frameshift		48896,48899	WP_013098552.1	phosphoenolpyruvate--protein phosphotransferase	100.0	27.0	80.7
MGA_2418	LOCUS_24020	sequence024:22024..22299(-)	partial			WP_023004221.1	toll/interleukin-1 receptor domain-containing protein	100.0	38.2	70.3
MGA_2422	LOCUS_24060	sequence024:25516..25848(+)	partial			WP_000973389.1	host cell division inhibitor Icd-like protein	98.2	58.4	60.2
MGA_2445	LOCUS_24290	sequence024:47978..48292(+)	partial			WP_015370080.1	DUF883 family protein	69.2	68.7	58.2
MGA_2452	LOCUS_24360	sequence024:54991..55122(+)	frameshift		54982	WP_013098424.1	glycine betaine/L-proline ABC transporter permease ProW	95.3	11.6	75.6
MGA_2457	LOCUS_24410	sequence024:59579..60721(+)	frameshift		60688	WP_001296316.1	multidrug efflux MFS transporter permease subunit EmrB	96.8	71.9	84.2
MGA_2458	LOCUS_24420	sequence024:60697..61113(+)	frameshift		60688	WP_013098429.1	multidrug efflux MFS transporter permease subunit EmrB	92.8	24.9	83.6
MGA_2461	LOCUS_24450	sequence025:3289..3414(-)	frameshift		3413	WP_001197835.1	multidrug efflux RND transporter permease subunit MdtB	100.0	3.9	73.2
MGA_2462	LOCUS_24460	sequence025:3399..4958(-)	frameshift		3412,4981	WP_013097900.1	MdtB/MuxB family multidrug efflux RND transporter permease subunit	99.0	49.4	76.7
MGA_2463	LOCUS_24470	sequence025:4967..6409(-)	frameshift		4981	WP_013097900.1	MdtB/MuxB family multidrug efflux RND transporter permease subunit	99.2	45.8	85.1
MGA_2468	LOCUS_24520	sequence025:11838..12188(-)	frameshift		12177	WP_050298642.1	diguanylate cyclase	97.4	10.1	51.3
MGA_2469	LOCUS_24530	sequence025:12094..14403(-)	frameshift		12180	WP_000043742.1	diguanylate cyclase	94.1	65.0	45.4
MGA_2470	LOCUS_24540	sequence025:14522..14872(-)	frameshift		14832	WP_015706058.1	phosphatase PAP2 family protein	85.3	48.8	41.2
MGA_2471	LOCUS_24550	sequence025:14830..15132(-)	frameshift		14832	WP_015706058.1	phosphatase PAP2 family protein	93.0	44.5	43.0
MGA_2480	LOCUS_24640	sequence025:26817..27734(+)	partial			WP_001068986.1	glycosyltransferase	67.5	67.8	31.8
MGA_2483	LOCUS_24670	sequence025:29739..31931(+)	partial			WP_005693543.1	phage tail fiber protein	16.0	19.6	33.6
MGA_2551	LOCUS_25330	sequence026:48380..>49204(-)	partial			WP_002208605.1	DNA polymerase III subunit gamma/tau	88.0	38.4	59.7
MGA_2584	LOCUS_25650	sequence027:30716..31294(-)	partial			WP_010930359.1	glutamine amidotransferase	83.9	72.8	48.9
MGA_2595	LOCUS_25760	sequence027:41111..41701(+)	partial			WP_003894962.1	MBL fold metallo-hydrolase	77.6	70.0	35.1
MGA_2606	LOCUS_25860	sequence028:380..1537(+)	frameshift		293	WP_010974158.1	iron ABC transporter permease	93.0	48.2	80.4
MGA_2611	LOCUS_25910	sequence028:5392..6378(+)	frameshift		6345	WP_014207108.1	lactonase family protein	95.7	76.4	56.2
MGA_2613	LOCUS_25930	sequence028:6514..7050(-)	frameshift		7144,7132	WP_011103634.1	LysR family transcriptional regulator	94.4	55.6	50.0
MGA_2614	LOCUS_25940	sequence028:7004..7414(-)	frameshift		7144,7132	WP_011103634.1	LysR family transcriptional regulator	74.3	35.4	55.1
MGA_2672	LOCUS_26510	sequence029:18381..18791(+)	frameshift		18408	WP_002210077.1	rod shape-determining protein MreD	92.6	77.8	84.1
MGA_2677	LOCUS_26560	sequence029:26582..26785(+)	partial			WP_001116614.1	p-hydroxybenzoic acid efflux pump operon protein AaeX	100.0	74.4	80.6
MGA_2709	LOCUS_26860	sequence030:14798..15805(+)	partial			WP_004534800.1	fimbrial protein	56.4	59.4	35.4
MGA_2724	LOCUS_27010	sequence030:31183..31836(-)	frameshift		31832	WP_001295427.1	methionine--tRNA ligase	99.5	31.8	76.4
MGA_2725	LOCUS_27020	sequence030:31755..33095(-)	frameshift		31832	WP_001301615.1	methionine--tRNA ligase	94.4	62.3	88.9
MGA_2732	LOCUS_27090	sequence030:39240..39965(+)	frameshift		39923	WP_005168149.1	Gfo/Idh/MocA family oxidoreductase	94.6	60.6	78.1
MGA_2733	LOCUS_27100	sequence030:39962..40339(+)	frameshift		39923	WP_005168149.1	Gfo/Idh/MocA family oxidoreductase	99.2	33.0	81.5
MGA_2741	LOCUS_27180	sequence031:1833..2189(+)	frameshift		2177	WP_002212160.1	methionine ABC transporter permease MetI	97.5	53.0	88.7
MGA_2742	LOCUS_27190	sequence031:2207..2485(+)	frameshift		2177	WP_003856130.1	methionine ABC transporter permease MetI	100.0	42.4	66.3
MGA_2745	LOCUS_27220	sequence031:3864..4163(+)	frameshift		4022	WP_015704457.1	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	52.5	22.1	82.7
MGA_2746	LOCUS_27230	sequence031:4046..4567(+)	frameshift		4019	WP_013095676.1	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	100.0	74.0	75.3
MGA_2757	LOCUS_27340	sequence031:16537..16965(-)	frameshift		16958	WP_005173174.1	ribonuclease HII	88.0	63.1	79.2
MGA_2758	LOCUS_27350	sequence031:16848..17165(-)	frameshift		16958	WP_000569431.1	ribonuclease HII	65.7	34.8	84.1
MGA_2786	LOCUS_27630	sequence031:45514..>46503(-)	partial			WP_002209361.1	Fe(3+)-hydroxamate ABC transporter permease FhuB	99.1	49.0	64.1
MGA_2788	LOCUS_27640	sequence032:383..760(-)	partial			WP_002209637.1	YceK/YidQ family lipoprotein	69.6	78.6	54.5
MGA_2793	LOCUS_27690	sequence032:4858..5544(-)	frameshift		5594	WP_015369218.1	MFS transporter	100.0	53.5	77.3
MGA_2794	LOCUS_27700	sequence032:5541..6137(-)	frameshift		5594	WP_015369218.1	MFS transporter	91.4	42.5	90.1
MGA_2807	LOCUS_27830	sequence032:17763..18212(+)	frameshift		18185	WP_005482918.1	alpha/beta hydrolase	77.2	38.6	33.9
MGA_2808	LOCUS_27840	sequence032:18212..18679(+)	frameshift		18167	WP_103676442.1	alpha/beta hydrolase	95.5	47.7	49.3
MGA_2823	LOCUS_27990	sequence032:34024..34617(-)	partial			WP_000086990.1	HD domain-containing protein	75.1	70.0	42.3
MGA_2841	LOCUS_28160	sequence033:7952..8188(-)	frameshift		7966	WP_001229266.1	integration host factor subunit alpha	94.9	74.7	97.3
MGA_2888	LOCUS_28630	sequence034:14872..15258(+)	partial			WP_000490084.1	DUF2502 domain-containing protein YpeC	64.1	75.9	40.2
MGA_2890	LOCUS_28650	sequence034:16901..17686(+)	frameshift		17683	WP_013878156.1	nucleoside permease NupC	100.0	65.5	83.2
MGA_2891	LOCUS_28660	sequence034:17740..18090(+)	frameshift		17683	WP_002211622.1	NupC/NupG family nucleoside CNT transporter	98.3	28.9	91.2
MGA_2906	LOCUS_28810	sequence034:33434..33952(-)	frameshift		34101	WP_002208493.1	ATP-binding protein	98.8	38.1	55.0
MGA_2907	LOCUS_28820	sequence034:33949..34791(-)	frameshift		34101	WP_011815859.1	ATP-binding protein	80.4	50.5	52.2
MGA_2916	LOCUS_28910	sequence034:41894..42451(+)	frameshift		42274	WP_000102880.1	N-acetylmuramoyl-L-alanine amidase AmiA	68.6	43.6	52.3
MGA_2917	LOCUS_28920	sequence034:42370..42750(+)	frameshift,internal_stop_codon	42749..42751(+)	42274	WP_015365483.1	N-acetylmuramoyl-L-alanine amidase AmiA	100.0	43.4	70.6
MGA_2923	LOCUS_28980	sequence035:4459..4962(+)	partial			WP_000247065.1	DnaA inactivator Hda	100.0	67.3	88.6
MGA_2929	LOCUS_29040	sequence035:11302..11601(-)	frameshift		11621	WP_013098229.1	thioredoxin-dependent thiol peroxidase	100.0	63.5	84.8
MGA_2930	LOCUS_29050	sequence035:11589..11768(-)	frameshift		11621	WP_013098229.1	thioredoxin-dependent thiol peroxidase	83.1	31.4	93.9
MGA_2932	LOCUS_29070	sequence035:12620..13315(+)	frameshift		13285	WP_015365464.1	4-hydroxy-tetrahydrodipicolinate synthase	95.7	75.7	84.6
MGA_2933	LOCUS_29080	sequence035:13327..13497(+)	frameshift		13294	WP_001311023.1	4-hydroxy-tetrahydrodipicolinate synthase	98.2	18.8	67.3
MGA_2937	LOCUS_29120	sequence035:16407..17765(+)	frameshift		17600	WP_000829360.1	tRNA cytosine(34) acetyltransferase TmcA	87.8	59.9	51.8
MGA_2938	LOCUS_29130	sequence035:17762..18376(+)	frameshift		17600	WP_015703147.1	GNAT family N-acetyltransferase	98.5	30.3	46.0
MGA_2985	LOCUS_29590	sequence036:31499..32143(-)	partial			WP_015706047.1	MOP flippase family protein	97.2	42.4	32.2
MGA_2996	LOCUS_29700	sequence036:39049..>39584(-)	partial			WP_015703809.1	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	93.2	40.4	74.5
MGA_3031	LOCUS_30040	sequence037:33478..33972(+)	frameshift		33963	WP_001024869.1	aspartate:alanine antiporter	98.2	28.7	80.1
MGA_3032	LOCUS_30050	sequence037:33981..35165(+)	frameshift		33963	WP_013097376.1	aspartate:alanine antiporter	99.5	69.9	86.5
MGA_3114	LOCUS_30850	sequence039:34025..35698(-)	partial			WP_001166913.1	hypothetical protein	44.3	54.3	24.0
MGA_3118	LOCUS_30890	sequence040:2664..3461(-)	partial			WP_011083873.1	sugar phosphate isomerase/epimerase and 4-hydroxyphenylpyruvate domain-containing protein	91.7	39.6	31.9
MGA_3154	LOCUS_31250	sequence041:11964..12206(-)	frameshift		12205	WP_002209695.1	heme ABC transporter permease	95.0	30.6	65.8
MGA_3155	LOCUS_31260	sequence041:12200..12703(-)	frameshift		12205	WP_011815898.1	heme ABC transporter permease	98.8	67.3	73.3
MGA_3193	LOCUS_31620	sequence042:19418..19831(+)	frameshift		19828	WP_015366599.1	NCS1 family nucleobase:cation symporter-1	91.2	25.1	92.8
MGA_3194	LOCUS_31630	sequence042:19831..20910(+)	frameshift		19828	WP_013097232.1	NCS1 family nucleobase:cation symporter-1	95.3	68.1	86.5
MGA_3204	LOCUS_31730	sequence043:2979..4589(+)	frameshift		4457	WP_011815763.1	phosphoribosylformylglycinamidine synthase	91.8	38.0	85.8
MGA_3205	LOCUS_31740	sequence043:4511..6868(+)	frameshift		4460	WP_013098307.1	phosphoribosylformylglycinamidine synthase	100.0	60.5	83.4
MGA_3290	LOCUS_32590	sequence046:1..906(+)	partial			WP_015705482.1	pyrroloquinoline quinone biosynthesis protein PqqF	92.0	35.7	40.7
MGA_3299	LOCUS_32680	sequence046:9759..10205(-)	frameshift		10207	WP_005794519.1	SP_1767 family glycosyltransferase	87.8	41.9	46.2
MGA_3300	LOCUS_32690	sequence046:10202..10726(-)	frameshift		10207	WP_005794519.1	SP_1767 family glycosyltransferase	79.3	44.6	35.3
MGA_3303	LOCUS_32720	sequence046:15368..15598(-)	frameshift		15690	WP_002209402.1	ribose 5-phosphate isomerase B	94.7	47.7	75.0
MGA_3313	LOCUS_32820	sequence046:23481..24464(+)	frameshift		24444,23478	WP_010926730.1	FUSC family protein	96.9	46.1	33.0
MGA_3315	LOCUS_32830	sequence047:1..2812(+)	partial			WP_011816917.1	AAA family ATPase	95.9	73.2	34.3
MGA_3328	LOCUS_32960	sequence047:11562..12119(+)	frameshift		11912	WP_002214048.1	beta-galactosidase	60.0	10.5	72.1
MGA_3329	LOCUS_32970	sequence047:12014..14653(+)	frameshift		11906	WP_000177875.1	beta-galactosidase	99.0	84.7	62.9
MGA_3367	LOCUS_33340	sequence049:542..2869(+)	partial			WP_001386603.1	autotransporter adhesin EhaA	91.6	55.2	36.6
MGA_3374	LOCUS_33410	sequence049:9619..10221(+)	frameshift		10122	WP_015705075.1	LLM class flavin-dependent oxidoreductase	84.0	49.3	87.5
MGA_3375	LOCUS_33420	sequence049:10218..10640(+)	frameshift		10122	WP_015705075.1	LLM class flavin-dependent oxidoreductase	100.0	41.1	75.0
MGA_3380	LOCUS_33470	sequence049:15677..16381(+)	frameshift		16306	WP_005764495.1	sugar ABC transporter substrate-binding protein	85.5	64.6	47.8
MGA_3381	LOCUS_33480	sequence049:16330..16599(+)	frameshift		16306	WP_010972981.1	sugar ABC transporter substrate-binding protein	97.8	29.1	51.1
MGA_3392	LOCUS_33590	sequence050:5700..5918(-)	frameshift		5971	WP_005171472.1	6-phospho-beta-glucosidase	100.0	15.1	79.2
MGA_3393	LOCUS_33600	sequence050:5915..7138(-)	frameshift		5971	WP_002208842.1	6-phospho-beta-glucosidase	94.8	80.8	77.2
MGA_3410	LOCUS_33770	sequence051:126..275(+)	frameshift		117	WP_000134253.1	tRNA pseudouridine(13) synthase TruD	79.6	11.2	64.1
MGA_3415	LOCUS_33820	sequence051:4082..4204(+)	frameshift		4073	WP_000081570.1	RNA polymerase sigma factor RpoS	100.0	12.1	97.5
MGA_3419	LOCUS_33860	sequence051:9384..10319(+)	frameshift		10232	WP_002210222.1	sugar ABC transporter ATP-binding protein	91.6	57.5	58.2
MGA_3420	LOCUS_33870	sequence051:10277..10867(+)	frameshift		10232	WP_002210222.1	sugar ABC transporter ATP-binding protein	99.5	39.5	70.4
MGA_3430	LOCUS_33970	sequence052:1..1497(+)	partial			WP_015703710.1	Zn(II)/Cd(II)/Pb(II) translocating P-type ATPase ZntA	96.8	65.3	61.4
MGA_3434	LOCUS_34010	sequence052:3380..3847(-)	frameshift		3864	WP_002209497.1	glycogen phosphorylase	100.0	19.0	81.9
MGA_3435	LOCUS_34020	sequence052:3844..5826(-)	frameshift		3864	WP_000993423.1	glycogen phosphorylase	99.1	80.2	83.0
MGA_3457	LOCUS_34220	sequence053:8813..9274(+)	frameshift		9214	WP_005168058.1	molybdenum-dependent transcriptional regulator	87.6	51.0	75.4
MGA_3458	LOCUS_34230	sequence053:9235..9594(+)	frameshift		9214	WP_005168058.1	molybdenum-dependent transcriptional regulator	99.2	46.0	52.9
MGA_3468	LOCUS_34320	sequence054:1..615(+)	partial			WP_001122547.1	DNA mismatch repair endonuclease MutL	95.6	31.4	59.0
MGA_3479	LOCUS_34430	sequence054:11598..11942(+)	frameshift		11936	WP_015704176.1	isovaleryl-CoA dehydrogenase	97.4	20.4	73.0
MGA_3480	LOCUS_34440	sequence054:11936..13225(+)	frameshift		11939	WP_013095296.1	isovaleryl-CoA dehydrogenase	95.3	75.0	64.5
MGA_3489	LOCUS_34530	sequence054:18517..19065(-)	partial			WP_011815433.1	LysM-like peptidoglycan-binding domain-containing protein	96.7	70.8	46.2
MGA_3510	LOCUS_34720	sequence056:1592..2731(+)	frameshift		2638	WP_005175141.1	methyl-accepting chemotaxis protein	92.1	55.5	55.4
MGA_3511	LOCUS_34730	sequence056:2686..3486(+)	frameshift		2638	WP_005175141.1	methyl-accepting chemotaxis protein	99.2	41.6	70.8
MGA_3524	LOCUS_34860	sequence056:16592..16978(-)	frameshift		16980	WP_011389056.1	histidine ammonia-lyase	80.5	20.0	69.9
MGA_3525	LOCUS_34870	sequence056:16975..18144(-)	frameshift		16980	WP_004192520.1	histidine ammonia-lyase	97.9	75.1	60.1
MGA_3527	LOCUS_34890	sequence056:19202..19468(-)	frameshift		19485	WP_005169060.1	HutD family protein	88.6	44.2	41.7
MGA_3533	LOCUS_34940	sequence057:3143..3877(-)	frameshift		3939	WP_001519447.1	HlyC/CorC family transporter	99.2	58.6	80.2
MGA_3534	LOCUS_34950	sequence057:3934..4428(-)	frameshift		3939	WP_010723175.1	HlyC/CorC family transporter	98.8	37.9	83.3
MGA_3576	LOCUS_35340	sequence059:7690..8430(+)	frameshift		8364	WP_015703864.1	RNA-guided endonuclease TnpB family protein	95.9	65.0	71.6
MGA_3583	LOCUS_35410	sequence059:14524..16776(-)	frameshift		16856,16030,16079	WP_015704755.1	two-component system sensor histidine kinase KdpD	99.5	83.5	64.8
MGA_3584	LOCUS_35420	sequence059:16779..17207(-)	frameshift		16856	WP_013097556.1	two-component system sensor histidine kinase KdpD	84.5	13.6	69.7
MGA_3586	LOCUS_35430	sequence060:1..1004(+)	partial			WP_236626684.1	hemagglutinin repeat-containing protein	50.8	16.8	35.8
MGA_3588	LOCUS_35450	sequence060:1611..1991(+)	frameshift,internal_stop_codon	1959..1961(+),1923..1925(+),1608..1610(+),1995..1997(+)	1862	WP_015704130.1	hypothetical protein	64.3	32.9	71.6
MGA_3590	LOCUS_35470	sequence060:2394..2570(+)	partial			WP_224144836.1	hemagglutinin repeat-containing protein	69.0	1.4	92.5
MGA_3593	LOCUS_35500	sequence060:5438..5902(+)	frameshift		5873,5869	WP_013097421.1	Cof-type HAD-IIB family hydrolase	94.8	53.3	50.7
MGA_3594	LOCUS_35510	sequence060:5932..6261(+)	frameshift		5873,5869	WP_013097421.1	Cof-type HAD-IIB family hydrolase	85.3	34.4	66.7
MGA_3614	LOCUS_35700	sequence061:8669..8917(-)	frameshift		8919	WP_003113674.1	ferritin-like domain-containing protein	100.0	48.5	57.3
MGA_3615	LOCUS_35710	sequence061:8914..9174(-)	frameshift		8925	WP_001109977.1	ferritin-like domain-containing protein	97.7	50.0	61.9
MGA_3634	LOCUS_35880	sequence062:11862..12077(+)	frameshift		11877	WP_011104036.1	glycoside hydrolase family 15 protein	93.0	10.9	75.8
MGA_3657	LOCUS_36080	sequence064:8377..8892(-)	partial			WP_004081283.1	GNAT family N-acetyltransferase	72.5	70.4	40.2
MGA_3660	LOCUS_36110	sequence065:1..658(+)	partial			WP_183353796.1	DUF3750 domain-containing protein	68.3	81.6	55.3
MGA_3668	LOCUS_36190	sequence065:7508..9265(+)	frameshift,internal_stop_codon	7509..7511(+)	7547	WP_002214670.1	ABC transporter permease subunit	96.4	80.6	47.9
MGA_3680	LOCUS_36310	sequence066:7001..7525(-)	frameshift		7542	WP_000649638.1	cardiolipin synthase ClsB	99.4	41.9	75.1
MGA_3681	LOCUS_36320	sequence066:7486..8244(-)	frameshift		7542	WP_000649638.1	cardiolipin synthase ClsB	92.5	56.2	65.7
MGA_3689	LOCUS_36380	sequence067:3870..4217(+)	frameshift		4118	WP_015368798.1	glyoxylate bypass operon transcriptional repressor IclR	72.2	29.3	79.5
MGA_3690	LOCUS_36390	sequence067:4148..4702(+)	frameshift		4118	WP_013095025.1	glyoxylate bypass operon transcriptional repressor IclR	99.5	66.5	77.6
MGA_3695	LOCUS_36440	sequence068:1..629(+)	frameshift		440	WP_000350351.1	glycoside hydrolase family 10 protein	71.2	33.3	69.1
MGA_3696	LOCUS_36450	sequence068:545..1213(+)	frameshift		437	WP_032715566.1	glycoside hydrolase family 10 protein	99.1	51.5	74.5
MGA_3704	LOCUS_36530	sequence068:7978..9918(-)	partial			WP_004543739.1	methyl-accepting chemotaxis protein	50.3	59.2	50.8
MGA_3718	LOCUS_36650	sequence070:7762..8265(-)	frameshift		8321	WP_001445374.1	ATP-dependent helicase HrpB	99.4	20.5	72.3
MGA_3719	LOCUS_36660	sequence070:8187..8876(-)	frameshift		8321	WP_015704428.1	ATP-dependent helicase HrpB	80.3	22.7	54.9
MGA_3728	LOCUS_36730	sequence072:668..1168(-)	frameshift		1203	WP_015705481.1	pyrroloquinoline quinone biosynthesis protein PqqE	99.4	43.4	86.7
MGA_3729	LOCUS_36740	sequence072:1144..1806(-)	frameshift		1203	WP_015705481.1	pyrroloquinoline quinone biosynthesis protein PqqE	90.5	52.4	89.9
MGA_3735	LOCUS_36800	sequence072:6828..>7421(-)	partial			WP_013098431.1	helix-turn-helix transcriptional regulator	95.4	73.2	67.6
MGA_3763	LOCUS_37040	sequence077:1962..2672(+)	frameshift		2669	WP_013095095.1	ribose ABC transporter permease	96.2	68.6	85.9
MGA_3764	LOCUS_37050	sequence077:2672..2944(+)	frameshift		2669	WP_015368708.1	putative carbohydrate ABC transporter permease	100.0	27.1	76.7
MGA_3774	LOCUS_37140	sequence079:3057..3599(+)	frameshift		2925	WP_000345378.1	nicotinamide riboside transporter PnuC	99.4	74.9	82.7
MGA_3781	LOCUS_37190	sequence080:1971..3053(-)	frameshift		3088,1987	WP_005157966.1	PTS glucose transporter subunit IIBC	99.4	75.1	88.3
MGA_3783	LOCUS_37210	sequence080:3597..4280(-)	frameshift		4276	WP_013097114.1	metal-dependent hydrolase	98.7	84.8	77.2
MGA_3793	LOCUS_37270	sequence084:1914..>2517(-)	partial			WP_013878146.1	cyanate transporter	95.5	48.0	50.3
MGA_3796	LOCUS_37290	sequence085:1223..>2487(-)	partial			WP_224144836.1	hemagglutinin repeat-containing protein	62.4	9.3	54.6
MGA_3797	LOCUS_37300	sequence086:160..396(-)	partial			WP_011387714.1	AAA family ATPase	59.0	21.3	60.9