{ "type": "genome", "identifier": "GCF_002099195.1", "organism": "Burkholderia puraquae", "title": "Burkholderia puraquae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Universidad Nacional de La Plata", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002099195.1", "bioproject": "PRJNA224116", "biosample": "SAMN06675007", "wgs_master": "NBYX00000000.1", "refseq_category": "na", "taxid": "1904757", "species_taxid": "1904757", "organism_name": "Burkholderia puraquae", "infraspecific_name": "strain=CAMPA 1040", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/04/18", "asm_name": "ASM209919v1", "asm_submitter": "Universidad Nacional de La Plata", "gbrs_paired_asm": "GCA_002099195.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/099/195/GCF_002099195.1_ASM209919v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8098134", "genome_size_ungapped": "8098134", "gc_percent": "66.500000", "replicon_count": "0", "scaffold_count": "82", "contig_count": "82", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002099195.1-RS_2024_04_22", "annotation_date": "2024-04-22", "total_gene_count": "7467", "protein_coding_gene_count": "7217", "non_coding_gene_count": "76", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-04-18", "dateModified": "2017-04-18", "datePublished": "2017-04-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Burkholderia puraquae" ], "sample_taxid": [ "1904757" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Argentina: Cordoba" ], "sample_host_location_id": [], "data_size": "2.194 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8098134", "Number of Sequences": "82", "Longest Sequences (bp)": "982812", "N50 (bp)": "290133", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.6", "Number of CDSs": "7249", "Average Protein Length": "320.2", "Coding Ratio (%)": "86.0", "Number of rRNAs": "8", "Number of tRNAs": "71", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Burkholderia puraquae", "strain": "strain=CAMPA 1040", "accession": "GCA_002099195.1", "taxid": 1904757, "species_taxid": 1904757, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2654, "total_fragments": 2660, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Burkholderia puraquae", "strain": "strain=LMG 29660", "accession": "GCA_902859845.1", "taxid": 1904757, "species_taxid": 1904757, "relation_to_type": "type", "validated": true, "ani": 99.9925, "matched_fragments": 2632, "total_fragments": 2660, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Burkholderia lata", "strain": "strain=383", "accession": "GCA_000012945.1", "taxid": 482957, "species_taxid": 482957, "relation_to_type": "suspected-type", "validated": true, "ani": 94.1978, "matched_fragments": 2175, "total_fragments": 2660, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia aenigmatica", "strain": "strain=LMG 13014", "accession": "GCA_902499175.1", "taxid": 2015348, "species_taxid": 2015348, "relation_to_type": "suspected-type", "validated": true, "ani": 94.1143, "matched_fragments": 2055, "total_fragments": 2660, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia contaminans", "strain": "strain=LMG 23361", "accession": "GCA_000987075.1", "taxid": 488447, "species_taxid": 488447, "relation_to_type": "type", "validated": true, "ani": 93.9447, "matched_fragments": 2215, "total_fragments": 2660, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia contaminans", "strain": "strain=LMG 23361", "accession": "GCA_001758385.2", "taxid": 488447, "species_taxid": 488447, "relation_to_type": "type", "validated": true, "ani": 93.8746, "matched_fragments": 2216, "total_fragments": 2660, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia cepacia", "strain": "strain=NBRC 14074", "accession": "GCA_001528845.1", "taxid": 292, "species_taxid": 292, "relation_to_type": "type", "validated": true, "ani": 93.6851, "matched_fragments": 2199, "total_fragments": 2660, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia cepacia", "strain": "strain=ATCC 25416", "accession": "GCA_000473485.1", "taxid": 292, "species_taxid": 292, "relation_to_type": "type", "validated": true, "ani": 93.6706, "matched_fragments": 2237, "total_fragments": 2660, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia cepacia", "strain": "strain=UCB 717", "accession": "GCA_001411495.1", "taxid": 292, "species_taxid": 292, "relation_to_type": "type", "validated": true, "ani": 93.6383, "matched_fragments": 2241, "total_fragments": 2660, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia catarinensis", "strain": "strain=89", "accession": "GCA_001883705.2", "taxid": 1108140, "species_taxid": 1108140, "relation_to_type": "type", "validated": true, "ani": 92.8857, "matched_fragments": 2105, "total_fragments": 2660, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia cenocepacia", "strain": "strain=NCTC13227", "accession": "GCA_900446215.1", "taxid": 95486, 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