{ "type": "genome", "identifier": "GCF_002101705.1", "organism": "Mycolicibacterium iranicum", "title": "Mycolicibacterium iranicum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Trento", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002101705.1", "bioproject": "PRJNA224116", "biosample": "SAMN04216933", "wgs_master": "LQPC00000000.1", "refseq_category": "reference genome", "taxid": "912594", "species_taxid": "912594", "organism_name": "Mycolicibacterium iranicum", "infraspecific_name": "strain=DSM 45541", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/04/20", "asm_name": "ASM210170v1", "asm_submitter": "University of Trento", "gbrs_paired_asm": "GCA_002101705.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/101/705/GCF_002101705.1_ASM210170v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6335651", "genome_size_ungapped": "6335651", "gc_percent": "66.000000", "replicon_count": "0", "scaffold_count": "82", "contig_count": "82", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002101705.1-RS_2024_03_19", "annotation_date": "2024-03-19", "total_gene_count": "6132", "protein_coding_gene_count": "5985", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-04-20", "dateModified": "2017-04-20", "datePublished": "2017-04-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycolicibacterium iranicum" ], "sample_taxid": [ "912594" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": 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"Mycolicibacterium litorale", "strain": "strain=CGMCC 4.5724", "accession": "GCA_004366555.1", "taxid": 758802, "species_taxid": 758802, "relation_to_type": "type", "validated": true, "ani": 80.7357, "matched_fragments": 1007, "total_fragments": 2068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium litorale", "strain": "strain=JCM 17423", "accession": "GCA_010731695.1", "taxid": 758802, "species_taxid": 758802, "relation_to_type": "type", "validated": true, "ani": 80.7256, "matched_fragments": 1003, "total_fragments": 2068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium rutilum", "strain": "strain=DSM 45405", "accession": "GCA_900108565.1", "taxid": 370526, "species_taxid": 370526, "relation_to_type": "type", "validated": true, "ani": 80.6378, "matched_fragments": 1023, "total_fragments": 2068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium phlei", "strain": "strain=CCUG 21000", "accession": "GCA_009192875.1", "taxid": 1771, "species_taxid": 1771, "relation_to_type": "type", "validated": true, "ani": 80.3024, "matched_fragments": 1000, "total_fragments": 2068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium phlei", "strain": "strain=CCUG 21000", "accession": "GCA_001583415.1", "taxid": 1771, "species_taxid": 1771, "relation_to_type": "type", "validated": true, "ani": 80.243, "matched_fragments": 1002, "total_fragments": 2068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium phlei", "strain": "strain=DSM 43239 = CCUG 21000", "accession": "GCA_001582015.1", "taxid": 1771, "species_taxid": 1771, "relation_to_type": "type", "validated": true, "ani": 80.2395, "matched_fragments": 1002, "total_fragments": 2068, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium celeriflavum", "strain": "strain=DSM 46765", "accession": 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