{ "type": "genome", "identifier": "GCF_002101735.1", "organism": "Mycobacterium kyorinense", "title": "Mycobacterium kyorinense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Trento", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002101735.1", "bioproject": "PRJNA224116", "biosample": "SAMN04216935", "wgs_master": "LQPE00000000.1", "refseq_category": "reference genome", "taxid": "487514", "species_taxid": "487514", "organism_name": "Mycobacterium kyorinense", "infraspecific_name": "strain=DSM 45166", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/04/20", "asm_name": "ASM210173v1", "asm_submitter": "University of Trento", "gbrs_paired_asm": "GCA_002101735.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/101/735/GCF_002101735.1_ASM210173v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5606671", "genome_size_ungapped": "5606671", "gc_percent": "67.000000", "replicon_count": "0", "scaffold_count": "180", "contig_count": "180", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002101735.1-RS_2024_05_17", "annotation_date": "2024-05-17", "total_gene_count": "5671", "protein_coding_gene_count": "5368", "non_coding_gene_count": "80", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-04-20", "dateModified": "2017-04-20", "datePublished": "2017-04-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycobacterium kyorinense" ], "sample_taxid": [ "487514" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan: Tokyo" ], "sample_host_location_id": [], "data_size": "1.553 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5606671", "Number of Sequences": "180", "Longest Sequences (bp)": "249288", "N50 (bp)": "71978", "Gap Ratio (%)": "0.000018", "GCcontent (%)": "66.8", "Number of CDSs": "5521", "Average Protein Length": "302.2", "Coding Ratio (%)": "89.3", "Number of rRNAs": "3", "Number of tRNAs": "75", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycobacterium kyorinense", "strain": "strain=DSM 45166", "accession": "GCA_002101735.1", "taxid": 487514, "species_taxid": 487514, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1772, "total_fragments": 1778, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Mycobacterium kyorinense", "strain": "strain=KUM060204T", "accession": "GCA_000759695.1", "taxid": 487514, "species_taxid": 487514, "relation_to_type": "type", "validated": true, "ani": 99.784, "matched_fragments": 1580, "total_fragments": 1778, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Mycobacterium branderi", "strain": "strain=DSM 44624", "accession": "GCA_002086575.1", "taxid": 43348, "species_taxid": 43348, "relation_to_type": "type", "validated": true, "ani": 90.8389, "matched_fragments": 1380, "total_fragments": 1778, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium branderi", "strain": "strain=JCM 12687", "accession": "GCA_010728725.1", "taxid": 43348, "species_taxid": 43348, "relation_to_type": "type", "validated": true, "ani": 90.8229, "matched_fragments": 1391, "total_fragments": 1778, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium celatum", "strain": "strain=DSM 44243", "accession": "GCA_002101595.1", "taxid": 28045, "species_taxid": 28045, "relation_to_type": "type", "validated": true, "ani": 90.5168, "matched_fragments": 1345, "total_fragments": 1778, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium celatum", "strain": "strain=ATCC 51131", "accession": "GCA_000974705.1", "taxid": 28045, "species_taxid": 28045, "relation_to_type": "type", "validated": true, "ani": 90.1181, "matched_fragments": 1033, "total_fragments": 1778, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium fragae", "strain": "strain=DSM 45731", "accession": "GCA_002102185.1", "taxid": 1260918, "species_taxid": 1260918, "relation_to_type": "type", "validated": true, "ani": 82.9077, "matched_fragments": 1099, "total_fragments": 1778, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium xenopi", "strain": 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