{ "type": "genome", "identifier": "GCF_002102025.1", "organism": "Mycobacterium bohemicum", "title": "Mycobacterium bohemicum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Trento", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002102025.1", "bioproject": "PRJNA224116", "biosample": "SAMN04216914", "wgs_master": "LQOK00000000.1", "refseq_category": "reference genome", "taxid": "56425", "species_taxid": "56425", "organism_name": "Mycobacterium bohemicum", "infraspecific_name": "strain=DSM 44277", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/04/20", "asm_name": "ASM210202v1", "asm_submitter": "University of Trento", "gbrs_paired_asm": "GCA_002102025.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/102/025/GCF_002102025.1_ASM210202v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5420516", "genome_size_ungapped": "5420516", "gc_percent": "69.000000", "replicon_count": "0", "scaffold_count": "52", "contig_count": "52", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002102025.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "5084", "protein_coding_gene_count": "4893", "non_coding_gene_count": "53", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-04-20", "dateModified": "2017-04-20", "datePublished": "2017-04-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycobacterium bohemicum" ], "sample_taxid": [ "56425" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Czech Republic: Ostrava" ], "sample_host_location_id": [], "data_size": "1.479 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5420516", "Number of Sequences": "52", "Longest Sequences (bp)": "456617", "N50 (bp)": "220473", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.2", "Number of CDSs": "5020", "Average Protein Length": "325.3", "Coding Ratio (%)": "90.4", "Number of rRNAs": "3", "Number of tRNAs": "54", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycobacterium bohemicum", "strain": "strain=DSM 44277", "accession": "GCA_002102025.1", "taxid": 56425, "species_taxid": 56425, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1761, "total_fragments": 1780, 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"organism_name": "Mycobacterium heidelbergense", "strain": "strain=DSM 44471", "accession": "GCA_002086215.1", "taxid": 53376, "species_taxid": 53376, "relation_to_type": "type", "validated": true, "ani": 84.123, "matched_fragments": 1163, "total_fragments": 1780, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium saskatchewanense", "strain": "strain=DSM 44616", "accession": "GCA_002101875.1", "taxid": 220927, "species_taxid": 220927, "relation_to_type": "type", "validated": true, "ani": 84.0144, "matched_fragments": 1255, "total_fragments": 1780, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium saskatchewanense", "strain": "strain=JCM 13016", "accession": "GCA_010729105.1", "taxid": 220927, "species_taxid": 220927, "relation_to_type": "type", "validated": true, "ani": 83.9979, "matched_fragments": 1299, "total_fragments": 1780, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium 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