{ "type": "genome", "identifier": "GCF_002102065.1", "organism": "Mycolicibacterium conceptionense", "title": "Mycolicibacterium conceptionense", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Trento", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002102065.1", "bioproject": "PRJNA224116", "biosample": "SAMN04216919", "wgs_master": "LQOP00000000.1", "refseq_category": "reference genome", "taxid": "451644", "species_taxid": "451644", "organism_name": "Mycolicibacterium conceptionense", "infraspecific_name": "strain=CCUG 50187", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/04/20", "asm_name": "ASM210206v1", "asm_submitter": "University of Trento", "gbrs_paired_asm": "GCA_002102065.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/102/065/GCF_002102065.1_ASM210206v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6468817", "genome_size_ungapped": "6468817", "gc_percent": "66.500000", "replicon_count": "0", "scaffold_count": "42", "contig_count": "42", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002102065.1-RS_2024_03_19", "annotation_date": "2024-03-19", "total_gene_count": "6256", "protein_coding_gene_count": "6122", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-04-20", "dateModified": "2017-04-20", "datePublished": "2017-04-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycolicibacterium conceptionense" ], "sample_taxid": [ "451644" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Reunion: Indian Ocean" ], "sample_host_location_id": [], "data_size": "1.783 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6468817", "Number of Sequences": "42", "Longest Sequences (bp)": "717853", "N50 (bp)": "320022", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.4", "Number of CDSs": "6253", "Average Protein Length": "318.2", "Coding Ratio (%)": "92.3", "Number of rRNAs": "3", "Number of tRNAs": "57", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycolicibacterium conceptionense", "strain": "strain=CCUG 50187", "accession": "GCA_002102065.1", "taxid": 451644, "species_taxid": 451644, "relation_to_type": "suspected-type", 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"matched_fragments": 1702, "total_fragments": 2136, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium nivoides", "strain": "strain=DL90", "accession": "GCA_003855255.1", "taxid": 2487344, "species_taxid": 2487344, "relation_to_type": "type", "validated": true, "ani": 87.5005, "matched_fragments": 1688, "total_fragments": 2136, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium neworleansense", "strain": "strain=type strain: ATCC 49404", "accession": "GCA_001245615.1", "taxid": 146018, "species_taxid": 146018, "relation_to_type": "type", "validated": true, "ani": 87.4455, "matched_fragments": 1711, "total_fragments": 2136, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium fortuitum subsp. acetamidolyticum", "strain": "strain=JCM6368", "accession": "GCA_001570465.1", "taxid": 144550, "species_taxid": 1766, "relation_to_type": "type", "validated": true, "ani": 87.3231, 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86.0449, "matched_fragments": 1580, "total_fragments": 2136, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycolicibacterium llatzerense", "strain": "strain=MG13", "accession": "GCA_025331195.1", "taxid": 280871, "species_taxid": 280871, "relation_to_type": "type", "validated": true, "ani": 80.3297, "matched_fragments": 893, "total_fragments": 2136, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium pallens", "strain": "strain=JCM 16370", "accession": "GCA_019456675.1", "taxid": 370524, "species_taxid": 370524, "relation_to_type": "type", "validated": true, "ani": 79.623, "matched_fragments": 868, "total_fragments": 2136, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium crocinum", "strain": "strain=JCM 16369", "accession": "GCA_022370635.3", "taxid": 388459, "species_taxid": 388459, "relation_to_type": "type", "validated": true, "ani": 79.6017, "matched_fragments": 854, "total_fragments": 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