{ "type": "genome", "identifier": "GCF_002102155.1", "organism": "Mycobacterium europaeum", "title": "Mycobacterium europaeum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Trento", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002102155.1", "bioproject": "PRJNA224116", "biosample": "SAMN04216924", "wgs_master": "LQOU00000000.1", "refseq_category": "na", "taxid": "761804", "species_taxid": "761804", "organism_name": "Mycobacterium europaeum", "infraspecific_name": "strain=DSM 45397", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/04/20", "asm_name": "ASM210215v1", "asm_submitter": "University of Trento", "gbrs_paired_asm": "GCA_002102155.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/102/155/GCF_002102155.1_ASM210215v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5630674", "genome_size_ungapped": "5630674", "gc_percent": "68.500000", "replicon_count": "0", "scaffold_count": "71", "contig_count": "71", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002102155.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "5360", "protein_coding_gene_count": "5172", "non_coding_gene_count": "52", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-04-20", "dateModified": "2017-04-20", "datePublished": "2017-04-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycobacterium europaeum" ], "sample_taxid": [ "761804" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Italy: Florence" ], "sample_host_location_id": [], "data_size": "1.543 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5630674", "Number of Sequences": "71", "Longest Sequences (bp)": "352540", "N50 (bp)": "163313", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "68.5", "Number of CDSs": "5314", "Average Protein Length": "318.6", "Coding Ratio (%)": "90.2", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycobacterium seoulense", "strain": "strain=JCM 16018", "accession": "GCA_010731595.1", "taxid": 386911, "species_taxid": 386911, "relation_to_type": "type", "validated": true, "ani": 89.8129, "matched_fragments": 1526, "total_fragments": 1843, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium paraseoulense", "strain": "strain=JCM 16952", "accession": "GCA_010731655.1", "taxid": 590652, "species_taxid": 590652, "relation_to_type": "type", "validated": true, "ani": 89.571, "matched_fragments": 1543, "total_fragments": 1843, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium paraseoulense", "strain": "strain=DSM 45000", "accession": "GCA_002086475.1", "taxid": 590652, "species_taxid": 590652, "relation_to_type": "type", "validated": true, "ani": 89.5329, "matched_fragments": 1497, "total_fragments": 1843, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium nebraskense", "strain": "strain=DSM 44803", "accession": "GCA_002102255.1", "taxid": 244292, "species_taxid": 244292, "relation_to_type": "type", "validated": true, "ani": 88.8383, "matched_fragments": 1473, "total_fragments": 1843, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium avium subsp. avium", "strain": "strain=ATCC 25291", "accession": "GCA_000174035.1", "taxid": 44454, "species_taxid": 1764, "relation_to_type": "type", "validated": true, "ani": 84.7869, "matched_fragments": 1187, "total_fragments": 1843, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium avium subsp. avium", "strain": "strain=DSM 44156", "accession": "GCA_009741445.1", "taxid": 44454, "species_taxid": 1764, "relation_to_type": "type", "validated": true, "ani": 84.7314, "matched_fragments": 1292, "total_fragments": 1843, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium heidelbergense", "strain": "strain=DSM 44471", "accession": "GCA_002086215.1", "taxid": 53376, "species_taxid": 53376, "relation_to_type": "type", "validated": true, "ani": 84.4905, "matched_fragments": 1140, "total_fragments": 1843, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium paraense", "strain": "strain=IEC26", "accession": "GCA_002101815.1", "taxid": 767916, "species_taxid": 767916, "relation_to_type": "type", "validated": true, "ani": 84.3769, "matched_fragments": 1304, "total_fragments": 1843, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium heidelbergense", "strain": "strain=JCM 14842", "accession": "GCA_010730745.1", "taxid": 53376, "species_taxid": 53376, "relation_to_type": "type", "validated": true, "ani": 84.3727, "matched_fragments": 1170, "total_fragments": 1843, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium intracellulare", "strain": "strain=ATCC 13950", "accession": "GCA_023278525.1", "taxid": 1767, "species_taxid": 1767, "relation_to_type": "suspected-type", "validated": true, "ani": 84.2358, "matched_fragments": 1336, "total_fragments": 1843, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium mantenii", "strain": "strain=JCM 18113", "accession": "GCA_010731775.1", "taxid": 560555, "species_taxid": 560555, "relation_to_type": "type", "validated": true, "ani": 84.224, "matched_fragments": 1411, "total_fragments": 1843, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium palustre", "strain": "strain=DSM 44572", "accession": "GCA_002101785.1", "taxid": 153971, "species_taxid": 153971, "relation_to_type": "type", "validated": true, "ani": 83.7157, "matched_fragments": 1214, "total_fragments": 1843, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium bohemicum", "strain": "strain=DSM 44277", "accession": "GCA_002102025.1", "taxid": 56425, "species_taxid": 56425, "relation_to_type": "type", "validated": true, "ani": 83.6119, "matched_fragments": 1254, "total_fragments": 1843, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium helveticum", "strain": "strain=16-83", "accession": "GCA_007714205.1", "taxid": 2592811, "species_taxid": 2592811, "relation_to_type": "type", "validated": true, "ani": 83.4325, "matched_fragments": 1131, "total_fragments": 1843, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium florentinum", "strain": "strain=JCM 14740", "accession": "GCA_010730355.1", "taxid": 292462, "species_taxid": 292462, "relation_to_type": "type", "validated": true, "ani": 82.7221, "matched_fragments": 1199, "total_fragments": 1843, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium florentinum", "strain": "strain=DSM 44852", "accession": "GCA_002101635.1", "taxid": 292462, "species_taxid": 292462, "relation_to_type": "type", "validated": true, "ani": 82.6419, "matched_fragments": 1199, "total_fragments": 1843, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium genavense", "strain": "strain=ATCC 51234", "accession": "GCA_000526915.1", "taxid": 36812, 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