{ "type": "genome", "identifier": "GCF_002102215.1", "organism": "Mycobacterium lacus", "title": "Mycobacterium lacus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Trento", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002102215.1", "bioproject": "PRJNA224116", "biosample": "SAMN04216936", "wgs_master": "LQPF00000000.1", "refseq_category": "na", "taxid": "169765", "species_taxid": "169765", "organism_name": "Mycobacterium lacus", "infraspecific_name": "strain=DSM 44577", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/04/20", "asm_name": "ASM210221v1", "asm_submitter": "University of Trento", "gbrs_paired_asm": "GCA_002102215.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/102/215/GCF_002102215.1_ASM210221v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4905288", "genome_size_ungapped": "4905288", "gc_percent": "67.000000", "replicon_count": "0", "scaffold_count": "187", "contig_count": "187", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002102215.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "4655", "protein_coding_gene_count": "4253", "non_coding_gene_count": "51", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-04-20", "dateModified": "2017-04-20", "datePublished": "2017-04-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycobacterium lacus" ], "sample_taxid": [ "169765" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Canada" ], "sample_host_location_id": [], "data_size": "1.361 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4905288", "Number of Sequences": "187", "Longest Sequences (bp)": "166030", "N50 (bp)": "55464", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "66.9", "Number of CDSs": "4449", "Average Protein Length": "317.9", "Coding Ratio (%)": "86.5", "Number of rRNAs": "3", "Number of tRNAs": "48", "Number of CRISPRs": "7" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycobacterium lacus", "strain": "strain=DSM 44577", "accession": "GCA_002102215.1", "taxid": 169765, "species_taxid": 169765, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1524, "total_fragments": 1539, "ani_threshold": 95, "status": "conclusive" }, { 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