{ "type": "genome", "identifier": "GCF_002105195.1", "organism": "Derxia lacustris", "title": "Derxia lacustris", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Nucleus of Nitrogen Fixation", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002105195.1", "bioproject": "PRJNA224116", "biosample": "SAMN06167564", "wgs_master": "MUHU00000000.1", "refseq_category": "reference genome", "taxid": "764842", "species_taxid": "764842", "organism_name": "Derxia lacustris", "infraspecific_name": "strain=HL-12", "isolate": "fresh water", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/04/21", "asm_name": "ASM210519v1", "asm_submitter": "Nucleus of Nitrogen Fixation", "gbrs_paired_asm": "GCA_002105195.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/105/195/GCF_002105195.1_ASM210519v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5470456", "genome_size_ungapped": "5470456", "gc_percent": "69.000000", "replicon_count": "0", "scaffold_count": "58", "contig_count": "58", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002105195.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "4744", "protein_coding_gene_count": "4639", "non_coding_gene_count": "66", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-04-21", "dateModified": "2017-04-21", "datePublished": "2017-04-21", "_annotation": { "sample_count": 1, "sample_organism": [ "Derxia lacustris" ], "sample_taxid": [ "764842" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Taiwan: Heaven Lake, Kaohsiung County" ], "sample_host_location_id": [], "data_size": "1.451 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 8.33, "strain_heterogeneity": 100.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5470456", "Number of Sequences": "58", "Longest Sequences (bp)": "694862", "N50 (bp)": "315009", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "69.1", "Number of CDSs": "4641", "Average Protein Length": "356.1", "Coding Ratio (%)": "90.6", "Number of rRNAs": "9", "Number of tRNAs": "61", "Number of CRISPRs": "9" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Derxia lacustris", "strain": "strain=HL-12", "accession": "GCA_002105195.1", "taxid": 764842, "species_taxid": 764842, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1739, "total_fragments": 1798, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Derxia gummosa", "strain": "strain=DSM 723", "accession": "GCA_000482785.1", "taxid": 203699, "species_taxid": 203699, "relation_to_type": "type", "validated": true, "ani": 87.2044, "matched_fragments": 1338, "total_fragments": 1798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquabacterium olei", "strain": "strain=NBRC 110486", "accession": "GCA_003100395.1", "taxid": 1296669, "species_taxid": 1296669, "relation_to_type": "type", "validated": true, "ani": 77.7006, "matched_fragments": 402, "total_fragments": 1798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Oxalicibacterium flavum", "strain": "strain=CCM 7086", "accession": "GCA_014635065.1", "taxid": 179467, "species_taxid": 179467, "relation_to_type": "type", "validated": true, "ani": 77.6913, "matched_fragments": 342, "total_fragments": 1798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerotilus natans subsp. natans", "strain": "strain=DSM 6575", "accession": "GCA_000689195.1", "taxid": 882627, "species_taxid": 34103, "relation_to_type": "type", "validated": true, "ani": 77.6573, "matched_fragments": 583, "total_fragments": 1798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerotilus montanus", "strain": "strain=HS", "accession": "GCA_013426955.1", "taxid": 522889, "species_taxid": 522889, "relation_to_type": "type", "validated": true, "ani": 77.6556, "matched_fragments": 495, "total_fragments": 1798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sphaerotilus natans", "strain": "strain=ATCC 13338", "accession": "GCA_900156335.1", "taxid": 34103, "species_taxid": 34103, "relation_to_type": "type", "validated": true, "ani": 77.6374, "matched_fragments": 618, "total_fragments": 1798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Aquabacterium lacunae", "strain": "strain=KMB7", "accession": "GCA_004310865.1", "taxid": 2528630, "species_taxid": 2528630, "relation_to_type": "type", "validated": true, "ani": 77.5849, "matched_fragments": 299, "total_fragments": 1798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pandoraea sputorum", "strain": "strain=NCTC13161", "accession": "GCA_900187205.1", "taxid": 93222, "species_taxid": 93222, "relation_to_type": "type", "validated": true, "ani": 77.1127, "matched_fragments": 248, "total_fragments": 1798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thauera phenylacetica", "strain": "strain=B4P", "accession": "GCA_000310225.1", "taxid": 164400, "species_taxid": 164400, "relation_to_type": "type", "validated": true, "ani": 77.1003, "matched_fragments": 419, "total_fragments": 1798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pandoraea sputorum", "strain": "strain=DSM 21091", "accession": "GCA_000814845.2", "taxid": 93222, 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76.8033, "matched_fragments": 626, "total_fragments": 1798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter humi", "strain": "strain=18x22-1", "accession": "GCA_004681975.1", "taxid": 2530451, "species_taxid": 2530451, "relation_to_type": "type", "validated": true, "ani": 76.8017, "matched_fragments": 449, "total_fragments": 1798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia caballeronis", "strain": "strain=TNe-841", "accession": "GCA_900104845.1", "taxid": 416943, "species_taxid": 416943, "relation_to_type": "type", "validated": true, "ani": 76.7705, "matched_fragments": 556, "total_fragments": 1798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Ramlibacter agri", "strain": "strain=G-1-2-2", "accession": "GCA_012927085.1", "taxid": 2728837, "species_taxid": 2728837, "relation_to_type": "type", "validated": true, "ani": 76.7247, "matched_fragments": 564, "total_fragments": 1798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Burkholderia plantarii", "strain": "strain=LMG 9035", "accession": "GCA_902832905.1", "taxid": 41899, "species_taxid": 41899, "relation_to_type": "type", "validated": true, "ani": 76.7119, "matched_fragments": 690, "total_fragments": 1798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paraburkholderia silviterrae", "strain": "strain=4M-K11", "accession": "GCA_004353915.1", "taxid": 2528715, "species_taxid": 2528715, "relation_to_type": "type", "validated": true, "ani": 76.6809, "matched_fragments": 464, "total_fragments": 1798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Massilia agri", "strain": "strain=JCM 31661", "accession": "GCA_024753255.1", "taxid": 1886785, "species_taxid": 1886785, "relation_to_type": "type", "validated": true, "ani": 76.6717, "matched_fragments": 432, "total_fragments": 1798, "ani_threshold": 95, "status": "below_threshold" }, { 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"accession": "GCA_001544575.2", "taxid": 1353886, "species_taxid": 1353886, "relation_to_type": "type", "validated": true, "ani": 76.3296, "matched_fragments": 433, "total_fragments": 1798, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Caballeronia cordobensis", "strain": "strain=LMG 27620", "accession": "GCA_001278535.1", "taxid": 1353886, "species_taxid": 1353886, "relation_to_type": "type", "validated": true, "ani": 76.2848, "matched_fragments": 442, "total_fragments": 1798, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 8.33, "strain_heterogeneity": 100.0 }, "gtdb_result": [ { "accession": "GCF_002105195.1", "gtdb_species": "s__Derxia lacustris", "ani": 100.0, "matched_fragments": 1728, "total_fragments": 1798, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Derxia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": 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"mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_013410775.1", "gtdb_species": "s__Sphaerotilus montanus", "ani": 77.6245, "matched_fragments": 500, "total_fragments": 1798, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Sphaerotilus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.98", "min_intra_species_ani": "99.98", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000015725.1", "gtdb_species": "s__Methylibium petroleiphilum", "ani": 77.5673, "matched_fragments": 531, "total_fragments": 1798, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Burkholderiales;f__Burkholderiaceae;g__Methylibium", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.91", "min_intra_species_ani": "96.03", 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