{ "type": "genome", "identifier": "GCF_002108495.1", "organism": "Neisseria canis", "title": "Neisseria canis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Wadsworth Center / NYSDOH", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002108495.1", "bioproject": "PRJNA224116", "biosample": "SAMN06212706", "wgs_master": "MTBL00000000.1", "refseq_category": "na", "taxid": "493", "species_taxid": "493", "organism_name": "Neisseria canis", "infraspecific_name": "strain=ATCC 14687", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/04/24", "asm_name": "ASM210849v1", "asm_submitter": "Wadsworth Center / NYSDOH", "gbrs_paired_asm": "GCA_002108495.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/108/495/GCF_002108495.1_ASM210849v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2529049", "genome_size_ungapped": "2529049", "gc_percent": "49.500000", "replicon_count": "0", "scaffold_count": "131", "contig_count": "131", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002108495.1-RS_2024_05_17", "annotation_date": "2024-05-17", "total_gene_count": "2515", "protein_coding_gene_count": "2366", "non_coding_gene_count": "54", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-04-24", "dateModified": "2017-04-24", "datePublished": "2017-04-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Neisseria canis" ], "sample_taxid": [ "493" ], "sample_host_organism": [ "missing" ], "sample_host_organism_id": [], "sample_host_disease": [ "missing" ], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.715 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.1, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2529049", "Number of Sequences": "131", "Longest Sequences (bp)": "210713", "N50 (bp)": "66623", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "49.7", "Number of CDSs": "2327", "Average Protein Length": "298.6", "Coding Ratio (%)": "82.4", "Number of rRNAs": "3", "Number of tRNAs": "48", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Neisseria canis", "strain": "strain=ATCC 14687", "accession": "GCA_002108495.1", "taxid": 493, "species_taxid": 493, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 789, "total_fragments": 793, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Neisseria canis", "strain": "strain=NCTC10296", "accession": "GCA_900636765.1", "taxid": 493, "species_taxid": 493, "relation_to_type": "type", "validated": true, "ani": 99.9832, "matched_fragments": 792, "total_fragments": 793, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Neisseria wadsworthii", "strain": "strain=9715", "accession": "GCA_000227765.1", "taxid": 607711, "species_taxid": 607711, "relation_to_type": "type", "validated": true, "ani": 90.1433, "matched_fragments": 646, "total_fragments": 793, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria dumasiana", "strain": "strain=93087", "accession": "GCA_002108505.1", "taxid": 1931275, "species_taxid": 1931275, "relation_to_type": "type", "validated": true, "ani": 84.3314, "matched_fragments": 349, "total_fragments": 793, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria dumasiana", "strain": "strain=LMG 30012", "accession": "GCA_022870885.1", 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"type", "validated": true, "ani": 79.854, "matched_fragments": 347, "total_fragments": 793, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Uruburuella suis", "strain": "strain=1258/02", "accession": "GCA_022870845.1", "taxid": 252130, "species_taxid": 252130, "relation_to_type": "type", "validated": true, "ani": 79.3486, "matched_fragments": 343, "total_fragments": 793, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Uruburuella suis", "strain": "strain=DSM 17474", "accession": "GCA_004341385.1", "taxid": 252130, "species_taxid": 252130, "relation_to_type": "type", "validated": true, "ani": 79.2974, "matched_fragments": 332, "total_fragments": 793, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bergeriella denitrificans", "strain": "strain=NBRC 102155", "accession": "GCA_001592185.1", "taxid": 494, "species_taxid": 494, "relation_to_type": "type", "validated": true, "ani": 79.0639, "matched_fragments": 228, 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"below_threshold" }, { "organism_name": "Neisseria elongata subsp. elongata", "strain": "strain=ATCC 25295", "accession": "GCA_900113545.1", "taxid": 214482, "species_taxid": 495, "relation_to_type": "type", "validated": true, "ani": 78.702, "matched_fragments": 261, "total_fragments": 793, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria meningitidis", "strain": "strain=PartJ-Nmeningitidis-RM8376", "accession": "GCA_022869645.1", "taxid": 487, "species_taxid": 487, "relation_to_type": "type", "validated": true, "ani": 78.2287, "matched_fragments": 242, "total_fragments": 793, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 99.1, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900636765.1", "gtdb_species": "s__Neisseria canis", "ani": 99.9832, "matched_fragments": 792, "total_fragments": 793, "gtdb_taxonomy": 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