{ "type": "genome", "identifier": "GCF_002108575.1", "organism": "Neisseria zoodegmatis", "title": "Neisseria zoodegmatis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Wadsworth Center / NYSDOH", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002108575.1", "bioproject": "PRJNA224116", "biosample": "SAMN06212709", "wgs_master": "MTBM00000000.1", "refseq_category": "na", "taxid": "326523", "species_taxid": "326523", "organism_name": "Neisseria zoodegmatis", "infraspecific_name": "strain=DSM 21643", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/04/24", "asm_name": "ASM210857v1", "asm_submitter": "Wadsworth Center / NYSDOH", "gbrs_paired_asm": "GCA_002108575.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/108/575/GCF_002108575.1_ASM210857v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2536387", "genome_size_ungapped": "2536387", "gc_percent": "51.000000", "replicon_count": "0", "scaffold_count": "87", "contig_count": "87", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002108575.1-RS_2024_05_17", "annotation_date": "2024-05-17", "total_gene_count": "2474", "protein_coding_gene_count": "2343", "non_coding_gene_count": "58", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-04-24", "dateModified": "2017-04-24", "datePublished": "2017-04-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Neisseria zoodegmatis" ], "sample_taxid": [ "326523" ], "sample_host_organism": [ "missing" ], "sample_host_organism_id": [], "sample_host_disease": [ "missing" ], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.715 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2536387", "Number of Sequences": "87", "Longest Sequences (bp)": "272013", "N50 (bp)": "154384", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "50.9", "Number of CDSs": "2274", "Average Protein Length": "307.1", "Coding Ratio (%)": "82.6", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Neisseria zoodegmatis", "strain": "strain=DSM 21643", "accession": "GCA_002108575.1", "taxid": 326523, "species_taxid": 326523, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 818, "total_fragments": 818, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Neisseria zoodegmatis", "strain": "strain=NCTC12230", "accession": "GCA_900187305.1", "taxid": 326523, "species_taxid": 326523, "relation_to_type": "type", "validated": true, "ani": 99.996, "matched_fragments": 817, "total_fragments": 818, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Neisseria dumasiana", "strain": "strain=93087", "accession": "GCA_002108505.1", "taxid": 1931275, "species_taxid": 1931275, "relation_to_type": "type", "validated": true, "ani": 90.2444, "matched_fragments": 666, "total_fragments": 818, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria dumasiana", "strain": "strain=LMG 30012", "accession": "GCA_022870885.1", "taxid": 1931275, "species_taxid": 1931275, "relation_to_type": "type", "validated": true, "ani": 90.123, "matched_fragments": 693, "total_fragments": 818, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria animaloris", "strain": "strain=DSM 21642", "accession": "GCA_002108605.1", "taxid": 326522, "species_taxid": 326522, "relation_to_type": "type", "validated": true, "ani": 86.172, "matched_fragments": 478, "total_fragments": 818, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria weaveri", "strain": "strain=NCTC12742", "accession": "GCA_900638685.1", "taxid": 28091, "species_taxid": 28091, "relation_to_type": "type", "validated": true, "ani": 85.0152, "matched_fragments": 383, "total_fragments": 818, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria weaveri", "strain": "strain=LMG 5135", "accession": "GCA_000224255.2", "taxid": 28091, "species_taxid": 28091, "relation_to_type": "type", "validated": true, "ani": 84.9315, "matched_fragments": 378, "total_fragments": 818, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Neisseria shayeganii", "strain": "strain=871", "accession": "GCA_000226875.1", "taxid": 607712, 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