{ "type": "genome", "identifier": "GCF_002108595.1", "organism": "Neisseria dentiae", "title": "Neisseria dentiae", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Wadsworth Center / NYSDOH", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002108595.1", "bioproject": "PRJNA224116", "biosample": "SAMN06212708", "wgs_master": "MTBO00000000.1", "refseq_category": "na", "taxid": "194197", "species_taxid": "194197", "organism_name": "Neisseria dentiae", "infraspecific_name": "strain=DSM 19151", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/04/24", "asm_name": "ASM210859v1", "asm_submitter": "Wadsworth Center / NYSDOH", "gbrs_paired_asm": "GCA_002108595.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/108/595/GCF_002108595.1_ASM210859v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "2758789", "genome_size_ungapped": "2758789", "gc_percent": "54.500000", "replicon_count": "0", "scaffold_count": "193", "contig_count": "193", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002108595.1-RS_2024_08_08", "annotation_date": "2024-08-08", "total_gene_count": "2783", "protein_coding_gene_count": "2502", "non_coding_gene_count": "57", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-04-24", "dateModified": "2017-04-24", "datePublished": "2017-04-24", "_annotation": { "sample_count": 1, "sample_organism": [ "Neisseria dentiae" ], "sample_taxid": [ "194197" ], "sample_host_organism": [ "missing" ], "sample_host_organism_id": [], "sample_host_disease": [ "missing" ], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "0.770 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 99.48, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "2758789", "Number of Sequences": "193", "Longest Sequences (bp)": "259878", "N50 (bp)": "58802", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "54.4", "Number of CDSs": "2461", "Average Protein Length": "298.0", "Coding Ratio (%)": "79.8", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Neisseria dentiae", "strain": "strain=DSM 19151", "accession": "GCA_002108595.1", "taxid": 194197, "species_taxid": 194197, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 850, "total_fragments": 859, "ani_threshold": 95, 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"strain=LMG 30012", "accession": "GCA_022870885.1", "taxid": 1931275, "species_taxid": 1931275, "relation_to_type": "type", "validated": true, "ani": 81.892, "matched_fragments": 510, "total_fragments": 859, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Uruburuella suis", "strain": "strain=DSM 17474", "accession": "GCA_004341385.1", "taxid": 252130, "species_taxid": 252130, "relation_to_type": "type", "validated": true, "ani": 80.8222, "matched_fragments": 497, "total_fragments": 859, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Uruburuella suis", "strain": "strain=1258/02", "accession": "GCA_022870845.1", "taxid": 252130, "species_taxid": 252130, "relation_to_type": "type", "validated": true, "ani": 80.7181, "matched_fragments": 526, "total_fragments": 859, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Uruburuella testudinis", "strain": "strain=CCUG 63373m", "accession": "GCA_022870865.1", "taxid": 1282863, 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