{ "type": "genome", "identifier": "GCF_002109495.1", "organism": "Magnetofaba australis IT-1", "title": "Magnetofaba australis IT-1", "description": "na", "data type": "Genome sequencing and assembly", "organization": "LNCC", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002109495.1", "bioproject": "PRJNA224116", "biosample": "SAMN04574817", "wgs_master": "LVJN00000000.1", "refseq_category": "reference genome", "taxid": "1434232", "species_taxid": "1472297", "organism_name": "Magnetofaba australis IT-1", "infraspecific_name": "strain=IT-1", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/04/25", "asm_name": "ASM210949v1", "asm_submitter": "LNCC", "gbrs_paired_asm": "GCA_002109495.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/109/495/GCF_002109495.1_ASM210949v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4986701", "genome_size_ungapped": "4986701", "gc_percent": "61.500000", "replicon_count": "0", "scaffold_count": "21", "contig_count": "21", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002109495.1-RS_2024_06_16", "annotation_date": "2024-06-16", "total_gene_count": "4302", "protein_coding_gene_count": "4172", "non_coding_gene_count": "56", "pubmed_id": "27801294" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-04-25", "dateModified": "2017-04-25", "datePublished": "2017-04-25", "_annotation": { "sample_count": 1, "sample_organism": [ "Magnetofaba australis IT-1" ], "sample_taxid": [ "1434232" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Brazil: Itaipu Lagoon, Niteroi, Rio de Janeiro State" ], "sample_host_location_id": [], "data_size": "1.382 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4986701", "Number of Sequences": "21", "Longest Sequences (bp)": "1497610", "N50 (bp)": "705613", "Gap Ratio (%)": "0.000140", "GCcontent (%)": "61.3", "Number of CDSs": "4276", "Average Protein Length": "335.9", "Coding Ratio (%)": "86.4", "Number of rRNAs": "6", "Number of tRNAs": "48", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Magnetofaba australis", "strain": "strain=IT-1", "accession": "GCA_002109495.1", "taxid": 1472297, "species_taxid": 1472297, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1652, "total_fragments": 1653, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Magnetococcus marinus", "strain": "strain=MC-1", "accession": "GCA_000014865.1", "taxid": 1124597, "species_taxid": 1124597, "relation_to_type": "type", "validated": true, "ani": 76.7475, "matched_fragments": 118, "total_fragments": 1653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioalbus denitrificans", "strain": "strain=DSM 26407", "accession": "GCA_003337735.1", "taxid": 547122, "species_taxid": 547122, "relation_to_type": "type", "validated": true, "ani": 76.6471, "matched_fragments": 128, "total_fragments": 1653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Thioalkalivibrio sulfidiphilus", "strain": "strain=HL-EbGR7", "accession": "GCA_000021985.1", "taxid": 1033854, "species_taxid": 1033854, "relation_to_type": "type", "validated": true, "ani": 76.449, "matched_fragments": 107, "total_fragments": 1653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfurivermis fontis", "strain": "strain=JG42", "accession": "GCA_004001245.1", "taxid": 1972068, "species_taxid": 1972068, "relation_to_type": "type", "validated": true, "ani": 76.264, "matched_fragments": 101, "total_fragments": 1653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Magnetospirillum gryphiswaldense", "strain": "strain=MSR-1", "accession": "GCA_000513295.1", "taxid": 55518, "species_taxid": 55518, "relation_to_type": "type", "validated": true, "ani": 76.1758, "matched_fragments": 95, "total_fragments": 1653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Sulfuricaulis limicola", "strain": "strain=HA5", "accession": "GCA_002355735.1", "taxid": 1620215, "species_taxid": 1620215, "relation_to_type": "type", "validated": true, "ani": 76.1657, "matched_fragments": 55, "total_fragments": 1653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Magnetospirillum gryphiswaldense", "strain": "strain=MSR-1", "accession": "GCA_002995515.1", "taxid": 55518, "species_taxid": 55518, "relation_to_type": "type", "validated": true, "ani": 76.1108, "matched_fragments": 90, "total_fragments": 1653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Paroceanicella profunda", "strain": "strain=D4M1", "accession": "GCA_005887635.2", "taxid": 2579971, "species_taxid": 2579971, "relation_to_type": "type", "validated": true, "ani": 76.038, "matched_fragments": 77, "total_fragments": 1653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fulvimonas soli", "strain": "strain=LMG 19981", "accession": "GCA_006352285.1", "taxid": 155197, "species_taxid": 155197, "relation_to_type": "type", "validated": true, "ani": 75.8513, "matched_fragments": 108, "total_fragments": 1653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas stenophila", "strain": "strain=CECT 7744", "accession": "GCA_014192275.1", "taxid": 795312, "species_taxid": 795312, "relation_to_type": "type", "validated": true, "ani": 75.8222, "matched_fragments": 76, "total_fragments": 1653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas pacifica", "strain": "strain=NBRC 102220", "accession": "GCA_007989625.1", "taxid": 77098, "species_taxid": 77098, "relation_to_type": "type", "validated": true, "ani": 75.7286, "matched_fragments": 82, "total_fragments": 1653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Geminicoccus roseus", "strain": "strain=DSM 18922", "accession": "GCA_000427665.1", "taxid": 404900, "species_taxid": 404900, "relation_to_type": "type", "validated": true, "ani": 75.711, "matched_fragments": 82, "total_fragments": 1653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Fulvimonas soli", "strain": "strain=DSM 14263", "accession": "GCA_003148905.1", "taxid": 155197, "species_taxid": 155197, "relation_to_type": "type", "validated": true, "ani": 75.6817, "matched_fragments": 113, "total_fragments": 1653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halomonas shengliensis", "strain": "strain=CGMCC 1.6444", "accession": "GCA_900104135.1", "taxid": 419597, "species_taxid": 419597, "relation_to_type": "type", "validated": true, "ani": 75.653, "matched_fragments": 103, "total_fragments": 1653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Reyranella aquatilis", "strain": "strain=KCTC 52223", "accession": "GCA_020880995.1", "taxid": 2035356, "species_taxid": 2035356, "relation_to_type": "type", "validated": true, "ani": 75.6348, "matched_fragments": 67, "total_fragments": 1653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudomonas oryziphila", "strain": "strain=1257", "accession": "GCA_003940825.1", "taxid": 2894079, "species_taxid": 2894079, "relation_to_type": "type", "validated": true, "ani": 75.5457, "matched_fragments": 71, "total_fragments": 1653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halovulum marinum", "strain": "strain=2CG4", "accession": "GCA_009697225.1", "taxid": 2662447, "species_taxid": 2662447, "relation_to_type": "type", "validated": true, "ani": 75.5381, "matched_fragments": 88, "total_fragments": 1653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Vineibacter terrae", "strain": "strain=CC-CFT640", "accession": "GCA_008039615.1", "taxid": 2586908, "species_taxid": 2586908, "relation_to_type": "type", "validated": true, "ani": 75.4606, "matched_fragments": 104, "total_fragments": 1653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces pactum", "strain": "strain=ATCC 27456", "accession": "GCA_016031615.1", "taxid": 68249, "species_taxid": 68249, "relation_to_type": "type", "validated": true, "ani": 75.361, "matched_fragments": 69, "total_fragments": 1653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Methylobacterium goesingense", "strain": "strain=DSM 21331", "accession": "GCA_022179225.1", "taxid": 243690, "species_taxid": 243690, "relation_to_type": "type", "validated": true, "ani": 75.2753, "matched_fragments": 51, "total_fragments": 1653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis methanolica", "strain": "strain=239", "accession": "GCA_000739085.1", "taxid": 1814, "species_taxid": 1814, "relation_to_type": "type", "validated": true, "ani": 75.2648, "matched_fragments": 53, "total_fragments": 1653, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Amycolatopsis methanolica", "strain": "strain=239", "accession": "GCA_000371885.1", "taxid": 1814, "species_taxid": 1814, "relation_to_type": "type", "validated": true, "ani": 75.1716, "matched_fragments": 52, "total_fragments": 1653, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002109495.1", "gtdb_species": "s__Magnetofaba australis", "ani": 100.0, "matched_fragments": 1652, "total_fragments": 1653, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Magnetococcia;o__Magnetococcales;f__Magnetococcaceae;g__Magnetofaba", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_000014865.1", "gtdb_species": "s__Magnetococcus marinus", "ani": 76.8647, "matched_fragments": 118, "total_fragments": 1653, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Magnetococcia;o__Magnetococcales;f__Magnetococcaceae;g__Magnetococcus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002753665.1", "gtdb_species": "s__DC0425bin3 sp002753665", "ani": 76.8302, "matched_fragments": 202, "total_fragments": 1653, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Magnetococcia;o__Magnetococcales;f__DC0425bin3;g__DC0425bin3", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.96", "min_intra_species_ani": "99.96", "mean_intra_species_af": "0.97", "min_intra_species_af": "0.97", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000377945.1", "gtdb_species": "s__Thioalkalivibrio_A sulfidiphilus_A", "ani": 76.6993, "matched_fragments": 94, "total_fragments": 1653, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Ectothiorhodospirales;f__Ectothiorhodospiraceae;g__Thioalkalivibrio_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003337735.1", "gtdb_species": "s__Thioalbus denitrificans", "ani": 76.6479, "matched_fragments": 128, "total_fragments": 1653, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__DSM-26407;f__DSM-26407;g__Thioalbus", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_015231925.1", "gtdb_species": "s__JADGAQ01 sp015231925", "ani": 76.4685, "matched_fragments": 134, "total_fragments": 1653, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Magnetococcia;o__Magnetococcales;f__JADGAQ01;g__JADGAQ01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_015231775.1", "gtdb_species": "s__JAANAU01 sp015231775", "ani": 76.4652, "matched_fragments": 122, "total_fragments": 1653, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Magnetococcia;o__Magnetococcales;f__Magnetaquicoccaceae;g__JAANAU01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.81", "min_intra_species_ani": "97.81", "mean_intra_species_af": "0.75", "min_intra_species_af": "0.75", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCA_015232245.1", "gtdb_species": "s__JAANAU01 sp015232245", "ani": 76.4424, "matched_fragments": 106, "total_fragments": 1653, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Magnetococcia;o__Magnetococcales;f__Magnetaquicoccaceae;g__JAANAU01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002840095.1", "gtdb_species": "s__Sulfurivermis sp002840095", "ani": 76.2964, "matched_fragments": 106, "total_fragments": 1653, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Thiohalomonadales;f__Thiohalomonadaceae;g__Sulfurivermis", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_015234115.1", "gtdb_species": "s__JAANAU01 sp015234115", "ani": 76.1118, "matched_fragments": 100, "total_fragments": 1653, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Magnetococcia;o__Magnetococcales;f__Magnetaquicoccaceae;g__JAANAU01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_002753495.1", "gtdb_species": "s__HA3dbin3 sp002753495", "ani": 76.0442, "matched_fragments": 91, "total_fragments": 1653, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Magnetococcia;o__Magnetococcales;f__DC0425bin3;g__HA3dbin3", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.85", "min_intra_species_ani": "99.85", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.94", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_005887635.2", "gtdb_species": "s__Paroceanicella profunda", "ani": 75.8745, "matched_fragments": 78, "total_fragments": 1653, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhodobacterales;f__Rhodobacteraceae;g__Paroceanicella", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_009295635.1", "gtdb_species": "s__S0819 sp009295635", "ani": 75.8564, "matched_fragments": 80, "total_fragments": 1653, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Nitrococcales;f__AK92;g__S0819", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "100.00", "min_intra_species_ani": "100.00", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014192275.1", "gtdb_species": "s__Halomonas stenophila", "ani": 75.8247, "matched_fragments": 76, "total_fragments": 1653, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Halomonas", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCA_015231295.1", "gtdb_species": "s__JAANAU01 sp015231295", "ani": 75.7824, "matched_fragments": 98, "total_fragments": 1653, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Magnetococcia;o__Magnetococcales;f__Magnetaquicoccaceae;g__JAANAU01", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001945395.1", "gtdb_species": "s__Pseudomonas_E sp001945395", "ani": 75.5181, "matched_fragments": 65, "total_fragments": 1653, "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Pseudomonadaceae;g__Pseudomonas_E", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Magnetofaba", "australis", "IT-1" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }