{
    "type": "genome",
    "identifier": "GCF_002111585.1",
    "organism": "Lonsdalea iberica",
    "title": "Lonsdalea iberica",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Research Institute of Forest Ecology Environment and Protection",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_002111585.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN04363720",
        "wgs_master": "LUTP00000000.1",
        "refseq_category": "reference genome",
        "taxid": "1082703",
        "species_taxid": "1082703",
        "organism_name": "Lonsdalea iberica",
        "infraspecific_name": "strain=LMG 26264",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/04/27",
        "asm_name": "ASM211158v1",
        "asm_submitter": "Research Institute of Forest Ecology Environment and Protection",
        "gbrs_paired_asm": "GCA_002111585.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/111/585/GCF_002111585.1_ASM211158v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3781823",
        "genome_size_ungapped": "3781823",
        "gc_percent": "55.000000",
        "replicon_count": "0",
        "scaffold_count": "133",
        "contig_count": "133",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_002111585.1-RS_2024_03_28",
        "annotation_date": "2024-03-28",
        "total_gene_count": "3436",
        "protein_coding_gene_count": "3176",
        "non_coding_gene_count": "58",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-04-27",
    "dateModified": "2017-04-27",
    "datePublished": "2017-04-27",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Lonsdalea iberica"
        ],
        "sample_taxid": [
            "1082703"
        ],
        "sample_host_organism": [
            "Quercus ilex"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Spain"
        ],
        "sample_host_location_id": [],
        "data_size": "1.081 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 98.96,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3781823",
        "Number of Sequences": "133",
        "Longest Sequences (bp)": "179294",
        "N50 (bp)": "80514",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "55.0",
        "Number of CDSs": "3374",
        "Average Protein Length": "304.9",
        "Coding Ratio (%)": "81.6",
        "Number of rRNAs": "2",
        "Number of tRNAs": "48",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Lonsdalea iberica",
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                "relation_to_type": "type",
                "validated": true,
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            },
            {
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                "accession": "GCA_900107885.1",
                "taxid": 71657,
                "species_taxid": 71657,
                "relation_to_type": "type",
                "validated": true,
                "ani": 91.8892,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
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            {
                "organism_name": "Lonsdalea britannica",
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                "taxid": 1082704,
                "species_taxid": 1082704,
                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dickeya dadantii subsp. dieffenbachiae",
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                "accession": "GCA_000406185.1",
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                "species_taxid": 204038,
                "relation_to_type": "type",
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                "matched_fragments": 526,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Dickeya fangzhongdai",
                "strain": "strain=CGMCC 1.15464",
                "accession": "GCA_014642955.1",
                "taxid": 1778540,
                "species_taxid": 1778540,
                "relation_to_type": "type",
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                "matched_fragments": 535,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brenneria nigrifluens",
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                "accession": "GCA_005484965.1",
                "taxid": 55210,
                "species_taxid": 55210,
                "relation_to_type": "type",
                "validated": true,
                "ani": 79.1489,
                "matched_fragments": 471,
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                "status": "below_threshold"
            },
            {
                "organism_name": "Musicola keenii",
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            },
            {
                "organism_name": "Serratia nevei",
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                "accession": "GCA_008364245.1",
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                "species_taxid": 2703794,
                "relation_to_type": "type",
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                "matched_fragments": 413,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Brenneria roseae subsp. roseae",
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                "accession": "GCA_003115845.1",
                "taxid": 1508506,
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            {
                "organism_name": "Serratia entomophila",
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                "accession": "GCA_021462285.1",
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            {
                "organism_name": "Serratia bockelmannii",
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                "relation_to_type": "type",
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Cronobacter muytjensii",
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            },
            {
                "organism_name": "Rahnella bonaserana",
                "strain": "strain=H11b",
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        ],
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                "accession": "GCF_002111585.1",
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        ]
    },
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    "quality": 3,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}