{
    "type": "genome",
    "identifier": "GCF_002114285.1",
    "organism": "Halorubrum ezzemoulense DSM 17463",
    "title": "Halorubrum ezzemoulense DSM 17463",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "University of Sevilla, Spain",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_002114285.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN06765717",
        "wgs_master": "NEDJ00000000.1",
        "refseq_category": "na",
        "taxid": "1121945",
        "species_taxid": "337243",
        "organism_name": "Halorubrum ezzemoulense DSM 17463",
        "infraspecific_name": "strain=DSM 17463",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/04/28",
        "asm_name": "ASM211428v1",
        "asm_submitter": "University of Sevilla, Spain",
        "gbrs_paired_asm": "GCA_002114285.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/114/285/GCF_002114285.1_ASM211428v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "archaea",
        "genome_size": "3603550",
        "genome_size_ungapped": "3603550",
        "gc_percent": "66.500000",
        "replicon_count": "0",
        "scaffold_count": "155",
        "contig_count": "155",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_002114285.1-RS_2024_10_22",
        "annotation_date": "2024-10-22",
        "total_gene_count": "3688",
        "protein_coding_gene_count": "3436",
        "non_coding_gene_count": "70",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-04-28",
    "dateModified": "2017-04-28",
    "datePublished": "2017-04-28",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Halorubrum ezzemoulense DSM 17463"
        ],
        "sample_taxid": [
            "1121945"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Algeria"
        ],
        "sample_host_location_id": [],
        "data_size": "0.991 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 95.83,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3603550",
        "Number of Sequences": "155",
        "Longest Sequences (bp)": "153528",
        "N50 (bp)": "40831",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "66.6",
        "Number of CDSs": "3519",
        "Average Protein Length": "284.1",
        "Coding Ratio (%)": "83.2",
        "Number of rRNAs": "3",
        "Number of tRNAs": "65",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Halorubrum ezzemoulense",
                "strain": "strain=DSM 17463",
                "accession": "GCA_002114285.1",
                "taxid": 337243,
                "species_taxid": 337243,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1110,
                "total_fragments": 1119,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Halorubrum ezzemoulense",
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                "accession": "GCA_000421805.1",
                "taxid": 337243,
                "species_taxid": 337243,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9203,
                "matched_fragments": 1090,
                "total_fragments": 1119,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Halorubrum coriense",
                "strain": "strain=DSM 10284",
                "accession": "GCA_000337035.1",
                "taxid": 64713,
                "species_taxid": 64713,
                "relation_to_type": "type",
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                "ani": 90.0744,
                "matched_fragments": 797,
                "total_fragments": 1119,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halorubrum distributum",
                "strain": "strain=JCM 10118",
                "accession": "GCA_000337335.1",
                "taxid": 29283,
                "species_taxid": 29283,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 89.9047,
                "matched_fragments": 805,
                "total_fragments": 1119,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halorubrum distributum",
                "strain": "strain=JCM 9100",
                "accession": "GCA_000337055.1",
                "taxid": 29283,
                "species_taxid": 29283,
                "relation_to_type": "suspected-type",
                "validated": true,
                "ani": 89.8341,
                "matched_fragments": 806,
                "total_fragments": 1119,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halorubrum arcis",
                "strain": "strain=JCM 13916",
                "accession": "GCA_000337015.1",
                "taxid": 368454,
                "species_taxid": 368454,
                "relation_to_type": "type",
                "validated": true,
                "ani": 89.6469,
                "matched_fragments": 802,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halorubrum depositum",
                "strain": "strain=Y78",
                "accession": "GCA_007671725.1",
                "taxid": 2583992,
                "species_taxid": 2583992,
                "relation_to_type": "type",
                "validated": true,
                "ani": 85.2213,
                "matched_fragments": 679,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 95.83,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_002114285.1",
                "gtdb_species": "s__Halorubrum ezzemoulense",
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halorubrum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.69",
                "min_intra_species_ani": "98.29",
                "mean_intra_species_af": "0.85",
                "min_intra_species_af": "0.81",
                "num_clustered_genomes": 17,
                "status": "conclusive"
            },
            {
                "accession": "GCF_000337035.1",
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halorubrum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_000337335.1",
                "gtdb_species": "s__Halorubrum distributum",
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halorubrum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.52",
                "min_intra_species_ani": "97.80",
                "mean_intra_species_af": "0.88",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 7,
                "status": "-"
            },
            {
                "accession": "GCF_000336875.1",
                "gtdb_species": "s__Halorubrum californiense",
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halorubrum",
                "ani_circumscription_radius": 95.0,
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_002355655.1",
                "gtdb_species": "s__Halorubrum trapanicum_A",
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halorubrum",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
                "accession": "GCF_003666015.1",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_018228765.1",
                "gtdb_species": "s__Halorubrum sp000296615",
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halorubrum",
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                "num_clustered_genomes": 2,
                "status": "-"
            },
            {
                "accession": "GCF_001280455.1",
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                "matched_fragments": 853,
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                "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Haloferacaceae;g__Halorubrum",
                "ani_circumscription_radius": 95.0,
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                "status": "-"
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        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": -0.222,
        "cell_length": 0.176,
        "doubling_h": 0.945,
        "growth_tmp": 37.0,
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        "genome_size": 3447014.0,
        "gc_content": 67.411,
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        "rRNA16S_genes": 2.5,
        "tRNA_genes": 49.0,
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        "sporulation": 0.0,
        "motility": 1.0,
        "range_salinity": 1.0,
        "facultative_respiration": 1.0,
        "anaerobic_respiration": 0.0,
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        "mesophilic_range_tmp": 1.0,
        "thermophilic_range_tmp": 0.0,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 1.0,
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        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.0,
        "vibrio_cell_shape": 0.0,
        "spiral_cell_shape": 0.0
    },
    "_genome_taxon": [
        "Halorubrum",
        "ezzemoulense",
        "DSM",
        "17463"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}