{ "type": "genome", "identifier": "GCF_002116635.1", "organism": "Mycobacterium szulgai", "title": "Mycobacterium szulgai", "description": "na", "data type": "Genome sequencing and assembly", "organization": "University of Trento", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002116635.1", "bioproject": "PRJNA224116", "biosample": "SAMN04216953", "wgs_master": "LQPW00000000.1", "refseq_category": "reference genome", "taxid": "1787", "species_taxid": "1787", "organism_name": "Mycobacterium szulgai", "infraspecific_name": "strain=DSM 44166", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/04/20", "asm_name": "ASM211663v1", "asm_submitter": "University of Trento", "gbrs_paired_asm": "GCA_002116635.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/116/635/GCF_002116635.1_ASM211663v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6672659", "genome_size_ungapped": "6672659", "gc_percent": "66.000000", "replicon_count": "0", "scaffold_count": "178", "contig_count": "178", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002116635.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "5923", "protein_coding_gene_count": "5659", "non_coding_gene_count": "56", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-04-20", "dateModified": "2017-04-20", "datePublished": "2017-04-20", "_annotation": { "sample_count": 1, "sample_organism": [ "Mycobacterium szulgai" ], "sample_taxid": [ "1787" ], "sample_host_organism": [ "Homo sapiens" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "missing" ], "sample_host_location_id": [], "data_size": "1.854 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6672659", "Number of Sequences": "178", "Longest Sequences (bp)": "296906", "N50 (bp)": "95710", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "65.8", "Number of CDSs": "5620", "Average Protein Length": "339.5", "Coding Ratio (%)": "85.8", "Number of rRNAs": "3", "Number of tRNAs": "53", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Mycobacterium szulgai", "strain": "strain=DSM 44166", "accession": "GCA_002116635.1", "taxid": 1787, "species_taxid": 1787, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2130, "total_fragments": 2135, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Mycobacterium angelicum", "strain": "strain=DSM 45057", "accession": "GCA_002086155.1", "taxid": 470074, "species_taxid": 470074, "relation_to_type": "type", "validated": true, "ani": 93.1125, "matched_fragments": 1835, "total_fragments": 2135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium lacus", "strain": "strain=DSM 44577", "accession": "GCA_002102215.1", "taxid": 169765, "species_taxid": 169765, "relation_to_type": "type", "validated": true, "ani": 81.7324, "matched_fragments": 1132, "total_fragments": 2135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium lacus", "strain": "strain=JCM 15657", "accession": "GCA_010731535.1", "taxid": 169765, "species_taxid": 169765, "relation_to_type": "type", "validated": true, "ani": 81.6772, "matched_fragments": 1169, "total_fragments": 2135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium pseudokansasii", "strain": "strain=MK142", "accession": "GCA_900566075.1", "taxid": 2341080, "species_taxid": 2341080, "relation_to_type": "type", "validated": true, "ani": 81.3901, "matched_fragments": 1228, "total_fragments": 2135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium ostraviense", "strain": "strain=241/15", "accession": "GCA_002705925.1", "taxid": 2738409, "species_taxid": 2738409, "relation_to_type": "type", "validated": true, "ani": 81.2227, "matched_fragments": 1197, "total_fragments": 2135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium persicum", "strain": "strain=AFPC-000227", "accession": "GCA_002086675.1", "taxid": 1487726, "species_taxid": 1487726, "relation_to_type": "type", "validated": true, "ani": 81.1835, "matched_fragments": 1148, "total_fragments": 2135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium kubicae", "strain": "strain=CIP 106428", "accession": "GCA_002101745.1", "taxid": 120959, "species_taxid": 120959, "relation_to_type": "type", "validated": true, "ani": 81.1678, "matched_fragments": 1053, "total_fragments": 2135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium kubicae", "strain": "strain=JCM 13573", "accession": "GCA_015689175.1", "taxid": 120959, "species_taxid": 120959, "relation_to_type": "type", "validated": true, "ani": 81.1668, "matched_fragments": 1058, "total_fragments": 2135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium kubicae", "strain": "strain=JCM 13573", "accession": "GCA_010723135.1", "taxid": 120959, "species_taxid": 120959, "relation_to_type": "type", "validated": true, "ani": 81.1282, "matched_fragments": 1062, "total_fragments": 2135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium gordonae", "strain": "strain=DSM 44160", "accession": "GCA_002101675.1", "taxid": 1778, "species_taxid": 1778, "relation_to_type": "type", "validated": true, "ani": 80.8864, "matched_fragments": 1210, "total_fragments": 2135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium attenuatum", "strain": "strain=MK41", "accession": "GCA_900566085.1", "taxid": 2341086, "species_taxid": 2341086, "relation_to_type": "type", "validated": true, "ani": 80.794, "matched_fragments": 1127, "total_fragments": 2135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium marseillense", "strain": "strain=JCM 17324", "accession": "GCA_010731675.1", "taxid": 701042, "species_taxid": 701042, "relation_to_type": "type", "validated": true, "ani": 80.6679, "matched_fragments": 1023, "total_fragments": 2135, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mycobacterium marseillense", "strain": "strain=DSM 45437", "accession": "GCA_002086345.1", "taxid": 701042, "species_taxid": 701042, 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