{ "type": "genome", "identifier": "GCF_002119225.1", "organism": "Streptomyces fradiae ATCC 10745 = DSM 40063", "title": "Streptomyces fradiae ATCC 10745 = DSM 40063", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Fraunhofer Institute for Interfacial Engineering and Biotechnolgy IGB", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002119225.1", "bioproject": "PRJNA224116", "biosample": "SAMN05722967", "wgs_master": "MIFZ00000000.1", "refseq_category": "na", "taxid": "1319510", "species_taxid": "1906", "organism_name": "Streptomyces fradiae ATCC 10745 = DSM 40063", "infraspecific_name": "strain=DSM 40063", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/05/08", "asm_name": "ASM211922v1", "asm_submitter": "Fraunhofer Institute for Interfacial Engineering and Biotechnolgy IGB", "gbrs_paired_asm": "GCA_002119225.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/119/225/GCF_002119225.1_ASM211922v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6716312", "genome_size_ungapped": "6705181", "gc_percent": "74.500000", "replicon_count": "0", "scaffold_count": "352", "contig_count": "352", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002119225.1-RS_2024_09_03", "annotation_date": "2024-09-03", "total_gene_count": "5967", "protein_coding_gene_count": "5706", "non_coding_gene_count": "70", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-05-08", "dateModified": "2017-05-08", "datePublished": "2017-05-08", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces fradiae ATCC 10745 = DSM 40063" ], "sample_taxid": [ "1319510" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "1.776 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6716312", "Number of Sequences": "352", "Longest Sequences (bp)": "116654", "N50 (bp)": "30888", "Gap Ratio (%)": "0.166848", "GCcontent (%)": "74.6", "Number of CDSs": "5695", "Average Protein Length": "321.2", "Coding Ratio (%)": "81.7", "Number of rRNAs": "3", "Number of tRNAs": "89", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces fradiae", "strain": "strain=DSM 40063", "accession": "GCA_002119225.1", "taxid": 1906, "species_taxid": 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1289, "total_fragments": 2057, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces lichenis", "strain": "strain=LCR6-01", "accession": "GCA_023218175.1", "taxid": 2306967, "species_taxid": 2306967, "relation_to_type": "type", "validated": true, "ani": 82.9863, "matched_fragments": 1244, "total_fragments": 2057, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces nymphaeiformis", "strain": "strain=SFB5A", "accession": "GCA_014203895.1", "taxid": 2663842, "species_taxid": 2663842, "relation_to_type": "type", "validated": true, "ani": 82.8174, "matched_fragments": 1255, "total_fragments": 2057, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces formicae", "strain": "strain=1H-GS9", "accession": "GCA_022647665.1", "taxid": 1616117, "species_taxid": 1616117, "relation_to_type": "type", "validated": true, "ani": 82.5994, "matched_fragments": 1169, "total_fragments": 2057, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces spinosus", "strain": "strain=SBTS01", "accession": "GCA_020400655.1", "taxid": 2872623, "species_taxid": 2872623, "relation_to_type": "type", "validated": true, "ani": 81.4051, "matched_fragments": 1212, "total_fragments": 2057, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces galilaeus", "strain": "strain=ATCC 14969", "accession": "GCA_008704575.1", "taxid": 33899, "species_taxid": 33899, "relation_to_type": "type", "validated": true, "ani": 81.3139, "matched_fragments": 1164, "total_fragments": 2057, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces bobili", "strain": "strain=NRRL B-1338", "accession": "GCA_002154575.1", "taxid": 67280, "species_taxid": 67280, "relation_to_type": "type", "validated": true, "ani": 81.2728, "matched_fragments": 997, "total_fragments": 2057, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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