{ "type": "genome", "identifier": "GCF_002119445.1", "organism": "Bacillus thuringiensis", "title": "Bacillus thuringiensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "May 15, 2014-2015", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002119445.1", "bioproject": "PRJNA224116", "biosample": "SAMN06844127", "wgs_master": "na", "refseq_category": "na", "taxid": "1428", "species_taxid": "1428", "organism_name": "Bacillus thuringiensis", "infraspecific_name": "strain=ATCC 10792", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/05/09", "asm_name": "ASM211944v1", "asm_submitter": "May 15, 2014-2015", "gbrs_paired_asm": "GCA_002119445.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/119/445/GCF_002119445.1_ASM211944v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6316280", "genome_size_ungapped": "6316280", "gc_percent": "35.000000", "replicon_count": "6", "scaffold_count": "6", "contig_count": "6", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002119445.1-RS_2024_08_17", "annotation_date": "2024-08-17", "total_gene_count": "6465", "protein_coding_gene_count": "6112", "non_coding_gene_count": "136", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-05-09", "dateModified": "2017-05-09", "datePublished": "2017-05-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Bacillus thuringiensis" ], "sample_taxid": [ "1428" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Korea" ], "sample_host_location_id": [], "data_size": "1.761 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 62.5, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6316280", "Number of Sequences": "6", "Longest Sequences (bp)": "5427594", "N50 (bp)": "5427594", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "35.0", "Number of CDSs": "6388", "Average Protein Length": "274.1", "Coding Ratio (%)": "83.2", "Number of rRNAs": "32", "Number of tRNAs": "98", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Bacillus thuringiensis", "strain": "strain=ATCC 10792", "accession": "GCA_002119445.1", "taxid": 1428, "species_taxid": 1428, "relation_to_type": "suspected-type", "validated": true, "ani": 100.0, "matched_fragments": 2093, "total_fragments": 2101, "ani_threshold": 95, "status": "indistinguishable" }, { "organism_name": "Bacillus thuringiensis", "strain": "strain=ATCC 10792", "accession": "GCA_000161615.1", "taxid": 1428, "species_taxid": 1428, "relation_to_type": "suspected-type", "validated": true, "ani": 99.8787, "matched_fragments": 2015, "total_fragments": 2101, "ani_threshold": 95, "status": "indistinguishable" }, { "organism_name": "Bacillus cereus", "strain": "strain=FSL M8-0473", "accession": "GCA_002014665.1", "taxid": 1396, "species_taxid": 1396, "relation_to_type": "suspected-type", "validated": true, "ani": 96.6519, "matched_fragments": 1528, "total_fragments": 2101, "ani_threshold": 95, "status": "indistinguishable" }, { "organism_name": "Bacillus cereus", "strain": "strain=ATCC 14579", "accession": "GCA_000007825.1", "taxid": 1396, "species_taxid": 1396, "relation_to_type": "suspected-type", "validated": true, "ani": 96.6432, "matched_fragments": 1629, "total_fragments": 2101, "ani_threshold": 95, "status": "indistinguishable" }, { "organism_name": "Bacillus cereus", "strain": "strain=ATCC 14579", "accession": "GCA_006094295.1", "taxid": 1396, "species_taxid": 1396, "relation_to_type": "suspected-type", "validated": true, "ani": 96.6408, "matched_fragments": 1633, "total_fragments": 2101, "ani_threshold": 95, "status": "indistinguishable" }, { "organism_name": "Bacillus cereus", "strain": "strain=NCTC2599", "accession": "GCA_900445355.1", "taxid": 1396, "species_taxid": 1396, "relation_to_type": "suspected-type", "validated": true, "ani": 96.6366, "matched_fragments": 1615, "total_fragments": 2101, "ani_threshold": 95, "status": "indistinguishable" }, { "organism_name": "Bacillus toyonensis", "strain": "strain=BCT-7112", "accession": "GCA_000496285.1", "taxid": 155322, "species_taxid": 155322, "relation_to_type": "type", "validated": true, "ani": 91.7905, "matched_fragments": 1467, "total_fragments": 2101, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus anthracis", "strain": "strain=Vollum", "accession": "GCA_022221345.1", "taxid": 1392, "species_taxid": 1392, "relation_to_type": "type", "validated": true, "ani": 91.4101, "matched_fragments": 1539, "total_fragments": 2101, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus sanguinis", "strain": "strain=BML-BC004", "accession": "GCA_018332475.1", "taxid": 2817476, "species_taxid": 2817476, "relation_to_type": "type", "validated": true, "ani": 91.3118, "matched_fragments": 1312, "total_fragments": 2101, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus pacificus", "strain": "strain=EB422", "accession": "GCA_001884025.1", "taxid": 2026187, "species_taxid": 2026187, "relation_to_type": "type", "validated": true, "ani": 91.1896, "matched_fragments": 1487, "total_fragments": 2101, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus mycoides", "strain": "strain=DSM 2048", "accession": "GCA_022630575.1", "taxid": 1405, "species_taxid": 1405, "relation_to_type": "type", "validated": true, "ani": 89.5529, "matched_fragments": 1483, "total_fragments": 2101, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Metabacillus bambusae", "strain": "strain=BG109", "accession": "GCA_017497975.1", "taxid": 2795218, "species_taxid": 2795218, "relation_to_type": "type", "validated": true, "ani": 76.7641, "matched_fragments": 112, "total_fragments": 2101, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Anoxybacillus kestanbolensis", "strain": "strain=NCIMB 13971", "accession": "GCA_023653015.1", "taxid": 227476, "species_taxid": 227476, "relation_to_type": "type", "validated": true, "ani": 76.0768, "matched_fragments": 62, "total_fragments": 2101, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 62.5, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002119445.1", "gtdb_species": "s__Bacillus_A thuringiensis", "ani": 100.0, "matched_fragments": 2095, "total_fragments": 2101, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 96.7077, "mean_intra_species_ani": "98.15", "min_intra_species_ani": "96.83", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.79", "num_clustered_genomes": 267, "status": "conclusive" }, { "accession": "GCF_000007825.1", "gtdb_species": "s__Bacillus_A cereus", "ani": 96.6447, "matched_fragments": 1630, "total_fragments": 2101, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 97.0513, "mean_intra_species_ani": "98.55", "min_intra_species_ani": "97.64", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.84", "num_clustered_genomes": 235, "status": "-" }, { "accession": "GCF_000021305.1", "gtdb_species": "s__Bacillus_A thuringiensis_S", "ani": 96.3287, "matched_fragments": 1637, "total_fragments": 2101, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 96.4134, "mean_intra_species_ani": "98.69", "min_intra_species_ani": "97.04", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.75", "num_clustered_genomes": 230, "status": "-" }, { "accession": "GCF_006384875.1", "gtdb_species": "s__Bacillus_A bombysepticus", "ani": 95.9465, "matched_fragments": 1649, "total_fragments": 2101, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 97.0513, "mean_intra_species_ani": "98.50", "min_intra_species_ani": "97.53", "mean_intra_species_af": "0.88", "min_intra_species_af": "0.81", "num_clustered_genomes": 586, "status": "-" }, { "accession": "GCF_002200015.1", "gtdb_species": "s__Bacillus_A cereus_AZ", "ani": 95.9139, "matched_fragments": 1534, "total_fragments": 2101, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 96.9563, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001595725.1", "gtdb_species": "s__Bacillus_A thuringiensis_K", "ani": 95.6649, "matched_fragments": 1720, "total_fragments": 2101, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 96.827, "mean_intra_species_ani": "99.05", "min_intra_species_ani": "98.75", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.78", "num_clustered_genomes": 20, "status": "-" }, { "accession": "GCF_002567495.1", "gtdb_species": "s__Bacillus_A cereus_AQ", "ani": 94.3699, "matched_fragments": 1590, "total_fragments": 2101, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.10", "min_intra_species_ani": "96.80", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.88", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_001455345.1", "gtdb_species": "s__Bacillus_A thuringiensis_N", "ani": 91.9526, "matched_fragments": 1531, "total_fragments": 2101, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "97.23", "min_intra_species_ani": "95.30", "mean_intra_species_af": "0.91", "min_intra_species_af": "0.84", "num_clustered_genomes": 24, "status": "-" }, { "accession": "GCF_000496285.1", "gtdb_species": "s__Bacillus_A toyonensis", "ani": 91.7678, "matched_fragments": 1466, "total_fragments": 2101, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.12", "min_intra_species_ani": "96.74", "mean_intra_species_af": "0.93", "min_intra_species_af": "0.83", "num_clustered_genomes": 279, "status": "-" }, { "accession": "GCF_900094905.1", "gtdb_species": "s__Bacillus_A cereus_AG", "ani": 91.5126, "matched_fragments": 1451, "total_fragments": 2101, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.51", "min_intra_species_ani": "99.13", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.90", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_018332475.1", "gtdb_species": "s__Bacillus_A sp018332475", "ani": 91.3118, "matched_fragments": 1312, "total_fragments": 2101, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.31", "min_intra_species_ani": "95.31", "mean_intra_species_af": "0.87", "min_intra_species_af": "0.87", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_008923725.1", "gtdb_species": "s__Bacillus_A sp008923725", "ani": 91.0053, "matched_fragments": 1477, "total_fragments": 2101, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.99", "min_intra_species_ani": "99.99", "mean_intra_species_af": "0.99", "min_intra_species_af": "0.99", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_002564555.1", "gtdb_species": "s__Bacillus_A cereus_K", "ani": 90.3309, "matched_fragments": 1330, "total_fragments": 2101, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Bacillus_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.77", "min_intra_species_ani": "97.26", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.89", "num_clustered_genomes": 7, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.176, "cell_length": 0.387, "doubling_h": -0.367, "growth_tmp": 29.0, "optimum_tmp": 28.917, "optimum_ph": 7.746, "genome_size": 6153835.201, "gc_content": 33.978, "coding_genes": 6046.726, "rRNA16S_genes": 13.312, "tRNA_genes": 103.413, "gram_stain": 1.0, "sporulation": 1.0, "motility": 1.0, "range_salinity": 1.0, "facultative_respiration": 0.0, "anaerobic_respiration": 0.0, "aerobic_respiration": 1.0, "mesophilic_range_tmp": 1.0, "thermophilic_range_tmp": 0.0, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 1.0, "coccus_cell_shape": 0.0, "filament_cell_shape": 0.0, "coccobacillus_cell_shape": 0.0, "vibrio_cell_shape": 0.0, "spiral_cell_shape": 0.0 }, "_genome_taxon": [ "Bacillus", "thuringiensis" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }