{ "type": "genome", "identifier": "GCF_002119765.1", "organism": "Pseudorhodoplanes sinuspersici", "title": "Pseudorhodoplanes sinuspersici", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Research institute of petroleum industry", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002119765.1", "bioproject": "PRJNA224116", "biosample": "SAMN06886414", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "1235591", "species_taxid": "1235591", "organism_name": "Pseudorhodoplanes sinuspersici", "infraspecific_name": "strain=RIPI110", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/05/09", "asm_name": "ASM211976v1", "asm_submitter": "Research institute of petroleum industry", "gbrs_paired_asm": "GCA_002119765.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/119/765/GCF_002119765.1_ASM211976v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "5971615", "genome_size_ungapped": "5971615", "gc_percent": "60.500000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002119765.1-RS_2024_04_30", "annotation_date": "2024-04-30", "total_gene_count": "5775", "protein_coding_gene_count": "5652", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-05-09", "dateModified": "2017-05-09", "datePublished": "2017-05-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Pseudorhodoplanes sinuspersici" ], "sample_taxid": [ "1235591" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Iran: Siri Island, Persian gulf" ], "sample_host_location_id": [], "data_size": "1.670 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "5971615", "Number of Sequences": "1", "Longest Sequences (bp)": "5971615", "N50 (bp)": "5971615", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "60.3", "Number of CDSs": "5778", "Average Protein Length": "300.9", "Coding Ratio (%)": "87.4", "Number of rRNAs": "3", "Number of tRNAs": "50", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Pseudorhodoplanes sinuspersici", "strain": "strain=RIPI110", "accession": "GCA_002119765.1", "taxid": 1235591, 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"status": "below_threshold" }, { "organism_name": "Afipia birgiae", "strain": "strain=34632", "accession": "GCA_000308295.2", "taxid": 151414, "species_taxid": 151414, "relation_to_type": "type", "validated": true, "ani": 77.6487, "matched_fragments": 325, "total_fragments": 1990, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Rhodopseudomonas faecalis", "strain": "strain=JCM 11668", "accession": "GCA_003217325.1", "taxid": 99655, "species_taxid": 99655, "relation_to_type": "type", "validated": true, "ani": 77.6324, "matched_fragments": 332, "total_fragments": 1990, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bradyrhizobium cenepequi", "strain": "strain=CNPSo 4026", "accession": "GCA_020329485.1", "taxid": 2821403, "species_taxid": 2821403, "relation_to_type": "type", "validated": true, "ani": 77.612, "matched_fragments": 390, "total_fragments": 1990, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": 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