{ "type": "genome", "identifier": "GCF_002120225.1", "organism": "Tenacibaculum holothuriorum", "title": "Tenacibaculum holothuriorum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "The Third Institute of State Oceanic Administration", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002120225.1", "bioproject": "PRJNA224116", "biosample": "SAMN03447969", "wgs_master": "LAPZ00000000.1", "refseq_category": "reference genome", "taxid": "1635173", "species_taxid": "1635173", "organism_name": "Tenacibaculum holothuriorum", "infraspecific_name": "strain=S2-2", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/05/09", "asm_name": "ASM212022v1", "asm_submitter": "The Third Institute of State Oceanic Administration", "gbrs_paired_asm": "GCA_002120225.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/120/225/GCF_002120225.1_ASM212022v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "3147654", "genome_size_ungapped": "3147654", "gc_percent": "31.000000", "replicon_count": "0", "scaffold_count": "31", "contig_count": "31", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002120225.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "2964", "protein_coding_gene_count": "2903", "non_coding_gene_count": "49", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-05-09", "dateModified": "2017-05-09", "datePublished": "2017-05-09", "_annotation": { "sample_count": 1, "sample_organism": [ "Tenacibaculum holothuriorum" ], "sample_taxid": [ "1635173" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Xiapu" ], "sample_host_location_id": [], "data_size": "0.868 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3147654", "Number of Sequences": "31", "Longest Sequences (bp)": "595704", "N50 (bp)": "349444", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "31.0", "Number of CDSs": "2899", "Average Protein Length": "331.0", "Coding Ratio (%)": "91.4", "Number of rRNAs": "1", "Number of tRNAs": "41", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Tenacibaculum holothuriorum", "strain": "strain=S2-2", "accession": "GCA_002120225.1", "taxid": 1635173, "species_taxid": 1635173, 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80.189, "matched_fragments": 496, "total_fragments": 1035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum mesophilum", "strain": "strain=DSM 13764", "accession": "GCA_003867075.1", "taxid": 104268, "species_taxid": 104268, "relation_to_type": "type", "validated": true, "ani": 79.9562, "matched_fragments": 473, "total_fragments": 1035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum mesophilum", "strain": "strain=DSM 13764", "accession": "GCA_900129475.1", "taxid": 104268, "species_taxid": 104268, "relation_to_type": "type", "validated": true, "ani": 79.9477, "matched_fragments": 479, "total_fragments": 1035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum mesophilum", "strain": "strain=DSM 13764", "accession": "GCA_009362255.1", "taxid": 104268, "species_taxid": 104268, "relation_to_type": "type", "validated": true, "ani": 79.8581, "matched_fragments": 481, "total_fragments": 1035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum caenipelagi", "strain": "strain=CECT 8283", "accession": "GCA_004363005.1", "taxid": 1325435, "species_taxid": 1325435, "relation_to_type": "type", "validated": true, "ani": 79.7782, "matched_fragments": 489, "total_fragments": 1035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum aiptasiae", "strain": "strain=a4", "accession": "GCA_008806755.1", "taxid": 426481, "species_taxid": 426481, "relation_to_type": "type", "validated": true, "ani": 79.6953, "matched_fragments": 573, "total_fragments": 1035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum haliotis", "strain": "strain=KCTC 52419", "accession": "GCA_025215075.1", "taxid": 1888914, "species_taxid": 1888914, "relation_to_type": "type", "validated": true, "ani": 79.2995, "matched_fragments": 464, "total_fragments": 1035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum adriaticum", "strain": "strain=DSM 18961", "accession": "GCA_008124875.1", "taxid": 413713, "species_taxid": 413713, "relation_to_type": "type", "validated": true, "ani": 78.8761, "matched_fragments": 432, "total_fragments": 1035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum aquimarinum", "strain": "strain=K20-16", "accession": "GCA_022478115.1", "taxid": 2910675, "species_taxid": 2910675, "relation_to_type": "type", "validated": true, "ani": 78.4758, "matched_fragments": 394, "total_fragments": 1035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Tenacibaculum todarodis", "strain": "strain=LPB0136", "accession": "GCA_001889045.1", "taxid": 1850252, "species_taxid": 1850252, "relation_to_type": "type", "validated": true, "ani": 78.203, "matched_fragments": 404, "total_fragments": 1035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter septentrionalilitoris", "strain": "strain=ANORD1", "accession": "GCA_009832745.1", "taxid": 2494657, "species_taxid": 2494657, "relation_to_type": "type", "validated": true, "ani": 77.6256, "matched_fragments": 323, "total_fragments": 1035, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Polaribacter undariae", "strain": "strain=KCTC 42175", "accession": "GCA_024918935.1", "taxid": 1574269, "species_taxid": 1574269, "relation_to_type": "type", "validated": true, "ani": 77.4213, "matched_fragments": 334, "total_fragments": 1035, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002120225.1", "gtdb_species": "s__Tenacibaculum holothuriorum", "ani": 100.0, "matched_fragments": 1032, "total_fragments": 1035, "gtdb_taxonomy": 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