{ "type": "genome", "identifier": "GCF_002127545.1", "organism": "Xenorhabdus beddingii", "title": "Xenorhabdus beddingii", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Goethe University", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002127545.1", "bioproject": "PRJNA224116", "biosample": "SAMN05375051", "wgs_master": "MUBK00000000.1", "refseq_category": "reference genome", "taxid": "40578", "species_taxid": "40578", "organism_name": "Xenorhabdus beddingii", "infraspecific_name": "strain=DSM 4764", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/05/11", "asm_name": "ASM212754v1", "asm_submitter": "Goethe University", "gbrs_paired_asm": "GCA_002127545.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/127/545/GCF_002127545.1_ASM212754v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4096854", "genome_size_ungapped": "4096354", "gc_percent": "45.000000", "replicon_count": "0", "scaffold_count": "210", "contig_count": "210", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002127545.1-RS_2024_04_22", "annotation_date": "2024-04-22", "total_gene_count": "3838", "protein_coding_gene_count": "3576", "non_coding_gene_count": "101", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-05-11", "dateModified": "2017-05-11", "datePublished": "2017-05-11", "_annotation": { "sample_count": 1, "sample_organism": [ "Xenorhabdus beddingii" ], "sample_taxid": [ "40578" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Australia: Queensland" ], "sample_host_location_id": [], "data_size": "1.171 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4096854", "Number of Sequences": "210", "Longest Sequences (bp)": "268423", "N50 (bp)": "115798", "Gap Ratio (%)": "0.012204", "GCcontent (%)": "45.2", "Number of CDSs": "3516", "Average Protein Length": "317.1", "Coding Ratio (%)": "81.6", "Number of rRNAs": "4", "Number of tRNAs": "78", "Number of CRISPRs": "3" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Xenorhabdus beddingii", "strain": "strain=DSM 4764", "accession": "GCA_002127545.1", "taxid": 40578, "species_taxid": 40578, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1280, "total_fragments": 1286, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Xenorhabdus miraniensis", "strain": "strain=DSM 17902", "accession": "GCA_002632615.1", "taxid": 351674, "species_taxid": 351674, "relation_to_type": "type", "validated": true, "ani": 86.3286, "matched_fragments": 1001, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xenorhabdus lircayensis", "strain": "strain=VLS", "accession": "GCA_016306625.1", "taxid": 2763499, "species_taxid": 2763499, "relation_to_type": "type", "validated": true, "ani": 85.3492, "matched_fragments": 971, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xenorhabdus japonica", "strain": "strain=DSM 16522", "accession": "GCA_900115195.1", "taxid": 53341, "species_taxid": 53341, "relation_to_type": "type", "validated": true, "ani": 84.1272, "matched_fragments": 855, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xenorhabdus 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"GCA_001908095.1", "taxid": 1873484, "species_taxid": 1873484, "relation_to_type": "type", "validated": true, "ani": 83.8314, "matched_fragments": 861, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xenorhabdus eapokensis", "strain": "strain=DL20", "accession": "GCA_001908105.1", "taxid": 1873482, "species_taxid": 1873482, "relation_to_type": "type", "validated": true, "ani": 83.8215, "matched_fragments": 846, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xenorhabdus hominickii", "strain": "strain=DSM 17903", "accession": "GCA_002632725.1", "taxid": 351679, "species_taxid": 351679, "relation_to_type": "type", "validated": true, "ani": 83.2543, "matched_fragments": 906, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Xenorhabdus bovienii", "strain": "strain=T228", "accession": "GCA_024721015.1", "taxid": 40576, "species_taxid": 40576, 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79.0169, "matched_fragments": 376, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Photorhabdus hindustanensis", "strain": "strain=H1", "accession": "GCA_002968995.1", "taxid": 2918802, "species_taxid": 2918802, "relation_to_type": "type", "validated": true, "ani": 78.7283, "matched_fragments": 361, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Photorhabdus noenieputensis", "strain": "strain=DSM 25462", "accession": "GCA_023108895.1", "taxid": 1208607, "species_taxid": 1208607, "relation_to_type": "type", "validated": true, "ani": 78.6216, "matched_fragments": 358, "total_fragments": 1286, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002127545.1", "gtdb_species": "s__Xenorhabdus beddingii", "ani": 100.0, "matched_fragments": 1280, "total_fragments": 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