{
    "type": "genome",
    "identifier": "GCF_002139935.1",
    "organism": "Campylobacter lanienae NCTC 13004",
    "title": "Campylobacter lanienae NCTC 13004",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "USDA, ARS, WRRC",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_002139935.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN03737977",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "1031753",
        "species_taxid": "75658",
        "organism_name": "Campylobacter lanienae NCTC 13004",
        "infraspecific_name": "strain=NCTC 13004",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/05/15",
        "asm_name": "ASM213993v1",
        "asm_submitter": "USDA, ARS, WRRC",
        "gbrs_paired_asm": "GCA_002139935.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/139/935/GCF_002139935.1_ASM213993v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "1594554",
        "genome_size_ungapped": "1594554",
        "gc_percent": "34.500000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-03-05",
        "total_gene_count": "1645",
        "protein_coding_gene_count": "1576",
        "non_coding_gene_count": "52",
        "pubmed_id": "28854596"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-05-15",
    "dateModified": "2017-05-15",
    "datePublished": "2017-05-15",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Campylobacter lanienae NCTC 13004"
        ],
        "sample_taxid": [
            "1031753"
        ],
        "sample_host_organism": [
            "Homo sapiens"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "Switzerland"
        ],
        "sample_host_location_id": [],
        "data_size": "0.437 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "1594554",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "1594554",
        "N50 (bp)": "1594554",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "34.6",
        "Number of CDSs": "1597",
        "Average Protein Length": "307.1",
        "Coding Ratio (%)": "92.3",
        "Number of rRNAs": "6",
        "Number of tRNAs": "40",
        "Number of CRISPRs": "1"
    },
    "has_analysis": true,
    "_dfastqc": {
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            {
                "organism_name": "Campylobacter lanienae",
                "strain": "strain=NCTC 13004",
                "accession": "GCA_002139935.1",
                "taxid": 75658,
                "species_taxid": 75658,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 531,
                "total_fragments": 531,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Campylobacter hyointestinalis subsp. lawsonii",
                "strain": "strain=CHY5",
                "accession": "GCA_013372165.1",
                "taxid": 91353,
                "species_taxid": 198,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.8961,
                "matched_fragments": 215,
                "total_fragments": 531,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Campylobacter hyointestinalis subsp. lawsonii",
                "strain": "strain=CCUG 34538",
                "accession": "GCA_008802075.1",
                "taxid": 91353,
                "species_taxid": 198,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.5683,
                "matched_fragments": 210,
                "total_fragments": 531,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Campylobacter hyointestinalis subsp. lawsonii",
                "strain": "strain=CHY5",
                "accession": "GCA_003289475.1",
                "taxid": 91353,
                "species_taxid": 198,
                "relation_to_type": "type",
                "validated": true,
                "ani": 82.5408,
                "matched_fragments": 200,
                "total_fragments": 531,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Campylobacter iguaniorum",
                "strain": "strain=1485E",
                "accession": "GCA_000736415.1",
                "taxid": 1244531,
                "species_taxid": 1244531,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.6207,
                "matched_fragments": 166,
                "total_fragments": 531,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Campylobacter fetus subsp. fetus",
                "strain": "strain=NCTC10842",
                "accession": "GCA_900475935.1",
                "taxid": 32019,
                "species_taxid": 196,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.494,
                "matched_fragments": 152,
                "total_fragments": 531,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Campylobacter fetus subsp. venerealis",
                "strain": "strain=NCTC 10354",
                "accession": "GCA_008271385.1",
                "taxid": 32020,
                "species_taxid": 196,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0587,
                "matched_fragments": 150,
                "total_fragments": 531,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Campylobacter fetus subsp. fetus",
                "strain": "strain=CCUG 6823 AT",
                "accession": "GCA_008693125.1",
                "taxid": 32019,
                "species_taxid": 196,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.9979,
                "matched_fragments": 147,
                "total_fragments": 531,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 0.0,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_002139935.1",
                "gtdb_species": "s__Campylobacter lanienae",
                "ani": 100.0,
                "matched_fragments": 531,
                "total_fragments": 531,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.68",
                "min_intra_species_ani": "97.32",
                "mean_intra_species_af": "0.93",
                "min_intra_species_af": "0.87",
                "num_clustered_genomes": 30,
                "status": "conclusive"
            },
            {
                "accession": "GCF_002139915.1",
                "gtdb_species": "s__Campylobacter sp002139915",
                "ani": 89.9205,
                "matched_fragments": 435,
                "total_fragments": 531,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.90",
                "min_intra_species_ani": "97.72",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.90",
                "num_clustered_genomes": 37,
                "status": "-"
            },
            {
                "accession": "GCF_002139855.1",
                "gtdb_species": "s__Campylobacter sp002139855",
                "ani": 86.9637,
                "matched_fragments": 452,
                "total_fragments": 531,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.28",
                "min_intra_species_ani": "98.16",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.94",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_002139875.1",
                "gtdb_species": "s__Campylobacter sp002139875",
                "ani": 83.4545,
                "matched_fragments": 414,
                "total_fragments": 531,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.96",
                "min_intra_species_ani": "97.26",
                "mean_intra_species_af": "0.92",
                "min_intra_species_af": "0.83",
                "num_clustered_genomes": 16,
                "status": "-"
            },
            {
                "accession": "GCA_017506845.1",
                "gtdb_species": "s__Campylobacter sp017506845",
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                "matched_fragments": 280,
                "total_fragments": 531,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "97.29",
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                "mean_intra_species_af": "0.81",
                "min_intra_species_af": "0.79",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCA_017646085.1",
                "gtdb_species": "s__Campylobacter sp017646085",
                "ani": 81.8728,
                "matched_fragments": 318,
                "total_fragments": 531,
                "gtdb_taxonomy": "d__Bacteria;p__Campylobacterota;c__Campylobacteria;o__Campylobacterales;f__Campylobacteraceae;g__Campylobacter",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": 0.079,
        "cell_length": 0.155,
        "doubling_h": 0.058,
        "growth_tmp": 37.0,
        "optimum_tmp": 38.124,
        "optimum_ph": 6.461,
        "genome_size": 1594552.0,
        "gc_content": 34.6,
        "coding_genes": 1565.5,
        "rRNA16S_genes": 3.0,
        "tRNA_genes": 39.0,
        "gram_stain": 0.0,
        "sporulation": 0.0,
        "motility": 0.869,
        "range_salinity": 0.0,
        "facultative_respiration": 0.0,
        "anaerobic_respiration": 0.0,
        "aerobic_respiration": 1.0,
        "mesophilic_range_tmp": 0.888,
        "thermophilic_range_tmp": 0.111,
        "psychrophilic_range_tmp": 0.0,
        "bacillus_cell_shape": 0.35,
        "coccus_cell_shape": 0.0,
        "filament_cell_shape": 0.0,
        "coccobacillus_cell_shape": 0.05,
        "vibrio_cell_shape": 0.1,
        "spiral_cell_shape": 0.5
    },
    "_genome_taxon": [
        "Campylobacter",
        "lanienae",
        "NCTC",
        "13004"
    ],
    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}