{ "type": "genome", "identifier": "GCF_002148965.1", "organism": "Streptomyces swartbergensis", "title": "Streptomyces swartbergensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Cape Peninsula University of Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002148965.1", "bioproject": "PRJNA224116", "biosample": "SAMN06928588", "wgs_master": "NGFN00000000.1", "refseq_category": "reference genome", "taxid": "487165", "species_taxid": "487165", "organism_name": "Streptomyces swartbergensis", "infraspecific_name": "strain=HMC13", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/05/18", "asm_name": "ASM214896v1", "asm_submitter": "Cape Peninsula University of Technology", "gbrs_paired_asm": "GCA_002148965.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/148/965/GCF_002148965.1_ASM214896v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9204779", "genome_size_ungapped": "9204525", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "870", "contig_count": "870", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002148965.1-RS_2024_04_22", "annotation_date": "2024-04-22", "total_gene_count": "8992", "protein_coding_gene_count": "8253", "non_coding_gene_count": "99", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-05-18", "dateModified": "2017-05-18", "datePublished": "2017-05-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces swartbergensis" ], "sample_taxid": [ "487165" ], "sample_host_organism": [ "Not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Africa: Uniondale" ], "sample_host_location_id": [], "data_size": "2.499 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 3.12, "strain_heterogeneity": 66.67, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9204779", "Number of Sequences": "870", "Longest Sequences (bp)": "107687", "N50 (bp)": "21344", "Gap Ratio (%)": "0.002770", "GCcontent (%)": "71.0", "Number of CDSs": "8072", "Average Protein Length": "302.8", "Coding Ratio (%)": "79.6", "Number of rRNAs": "7", "Number of tRNAs": "82", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces swartbergensis", "strain": "strain=HMC13", "accession": "GCA_002148965.1", "taxid": 487165, 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93.2262, "matched_fragments": 1852, "total_fragments": 2650, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces lomondensis", "strain": "strain=DSM 41428", "accession": "GCA_021440105.1", "taxid": 68229, "species_taxid": 68229, "relation_to_type": "type", "validated": true, "ani": 91.7263, "matched_fragments": 2025, "total_fragments": 2650, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces purpurascens", "strain": "strain=DSM 40310", "accession": "GCA_021390235.1", "taxid": 1924, "species_taxid": 1924, "relation_to_type": "type", "validated": true, "ani": 91.3804, "matched_fragments": 2004, "total_fragments": 2650, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces hawaiiensis", "strain": "strain=ATCC 12236", "accession": "GCA_004803895.1", "taxid": 67305, "species_taxid": 67305, "relation_to_type": "type", "validated": true, "ani": 90.8036, "matched_fragments": 2003, "total_fragments": 2650, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces djakartensis", "strain": "strain=JCM 4957", "accession": "GCA_014651075.1", "taxid": 68193, "species_taxid": 68193, "relation_to_type": "type", "validated": true, "ani": 90.3503, "matched_fragments": 1789, "total_fragments": 2650, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces cahuitamycinicus", "strain": "strain=13K301", "accession": "GCA_002891435.1", "taxid": 2070367, "species_taxid": 2070367, "relation_to_type": "type", "validated": true, "ani": 90.2888, "matched_fragments": 1683, "total_fragments": 2650, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces indiaensis", "strain": "strain=DSM 43803", "accession": "GCA_021474405.1", "taxid": 284033, "species_taxid": 284033, "relation_to_type": "type", "validated": true, "ani": 90.0304, "matched_fragments": 1703, "total_fragments": 2650, "ani_threshold": 95, 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africanus", "ani": 93.2037, "matched_fragments": 1853, "total_fragments": 2650, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_000717875.1", "gtdb_species": "s__Streptomyces sp000717875", "ani": 90.7984, "matched_fragments": 1856, "total_fragments": 2650, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.70", "min_intra_species_ani": "99.70", "mean_intra_species_af": "0.96", "min_intra_species_af": "0.96", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_004803895.1", "gtdb_species": "s__Streptomyces hawaiiensis", "ani": 90.7905, "matched_fragments": 2005, "total_fragments": 2650, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.39", "min_intra_species_ani": "95.39", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.84", "num_clustered_genomes": 3, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": -0.201, "cell_length": -0.05, "doubling_h": 0.103, "growth_tmp": 27.757, "optimum_tmp": 29.036, "optimum_ph": 7.341, "genome_size": 8292419.302, "gc_content": 71.543, "coding_genes": 7141.289, "rRNA16S_genes": 6.155, "tRNA_genes": 67.804, "gram_stain": 0.998, "sporulation": 0.958, "motility": 0.049, "range_salinity": 0.666, "facultative_respiration": 0.0, "anaerobic_respiration": 0.005, "aerobic_respiration": 0.994, "mesophilic_range_tmp": 0.98, "thermophilic_range_tmp": 0.019, "psychrophilic_range_tmp": 0.0, "bacillus_cell_shape": 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