{ "type": "genome", "identifier": "GCF_002149035.1", "organism": "Streptosporangium minutum", "title": "Streptosporangium minutum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Cape Peninsula University of Technology", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002149035.1", "bioproject": "PRJNA224116", "biosample": "SAMN06928586", "wgs_master": "NGFP00000000.1", "refseq_category": "reference genome", "taxid": "569862", "species_taxid": "569862", "organism_name": "Streptosporangium minutum", "infraspecific_name": "strain=M26", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/05/18", "asm_name": "ASM214903v1", "asm_submitter": "Cape Peninsula University of Technology", "gbrs_paired_asm": "GCA_002149035.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/149/035/GCF_002149035.1_ASM214903v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "9581188", "genome_size_ungapped": "9581125", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "549", "contig_count": "549", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002149035.1-RS_2024_04_11", "annotation_date": "2024-04-11", "total_gene_count": "8934", "protein_coding_gene_count": "8598", "non_coding_gene_count": "88", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-05-18", "dateModified": "2017-05-18", "datePublished": "2017-05-18", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptosporangium minutum" ], "sample_taxid": [ "569862" ], "sample_host_organism": [ "Not applicable" ], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "South Africa: Roodepoort" ], "sample_host_location_id": [], "data_size": "2.603 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 2.89, "strain_heterogeneity": 83.33, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "9581188", "Number of Sequences": "549", "Longest Sequences (bp)": "107883", "N50 (bp)": "30587", "Gap Ratio (%)": "0.000658", "GCcontent (%)": "70.8", "Number of CDSs": "8491", "Average Protein Length": "308.5", "Coding Ratio (%)": "82.0", "Number of rRNAs": "8", "Number of tRNAs": "80", "Number of CRISPRs": "4" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptosporangium minutum", "strain": "strain=M26", "accession": "GCA_002149035.1", "taxid": 569862, "species_taxid": 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84.6332, "matched_fragments": 1541, "total_fragments": 2927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planomonospora sphaerica", "strain": "strain=JCM 9374", "accession": "GCA_001653075.1", "taxid": 161355, "species_taxid": 161355, "relation_to_type": "type", "validated": true, "ani": 84.4401, "matched_fragments": 1608, "total_fragments": 2927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planobispora longispora", "strain": "strain=NBRC 13918", "accession": "GCA_016863135.1", "taxid": 28887, "species_taxid": 28887, "relation_to_type": "type", "validated": true, "ani": 84.2557, "matched_fragments": 1681, "total_fragments": 2927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Planobispora rosea", "strain": "strain=NBRC 15558", "accession": "GCA_016863155.1", "taxid": 35762, "species_taxid": 35762, "relation_to_type": "type", "validated": true, "ani": 84.0709, "matched_fragments": 1609, "total_fragments": 2927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea rhizosphaerae", "strain": "strain=CGMCC 4.7431", "accession": "GCA_019396405.1", "taxid": 2665663, "species_taxid": 2665663, "relation_to_type": "type", "validated": true, "ani": 80.6206, "matched_fragments": 961, "total_fragments": 2927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea roseoviolacea subsp. carminata", "strain": "strain=DSM 44170", "accession": "GCA_024172185.1", "taxid": 160689, "species_taxid": 103837, "relation_to_type": "type", "validated": true, "ani": 80.5578, "matched_fragments": 1481, "total_fragments": 2927, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Nonomuraea aurantiaca", "strain": "strain=NEAU-L178", "accession": "GCA_020215705.1", "taxid": 2878562, "species_taxid": 2878562, "relation_to_type": "type", "validated": true, "ani": 80.3451, "matched_fragments": 1485, "total_fragments": 2927, "ani_threshold": 95, 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