{ "type": "genome", "identifier": "GCF_002150585.1", "organism": "Algoriphagus faecimaris", "title": "Algoriphagus faecimaris", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Shandong Uniwersity at Weihai", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002150585.1", "bioproject": "PRJNA224116", "biosample": "SAMN06192699", "wgs_master": "MSSX00000000.1", "refseq_category": "na", "taxid": "686796", "species_taxid": "686796", "organism_name": "Algoriphagus faecimaris", "infraspecific_name": "strain=JCM 16561", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/05/19", "asm_name": "ASM215058v1", "asm_submitter": "Shandong Uniwersity at Weihai", "gbrs_paired_asm": "GCA_002150585.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/150/585/GCF_002150585.1_ASM215058v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4679301", "genome_size_ungapped": "4679301", "gc_percent": "41.500000", "replicon_count": "0", "scaffold_count": "134", "contig_count": "134", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002150585.1-RS_2024_03_28", "annotation_date": "2024-03-28", "total_gene_count": "4110", "protein_coding_gene_count": "4033", "non_coding_gene_count": "47", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-05-19", "dateModified": "2017-05-19", "datePublished": "2017-05-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Algoriphagus faecimaris" ], "sample_taxid": [ "686796" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "China: Weihai" ], "sample_host_location_id": [], "data_size": "1.332 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4679301", "Number of Sequences": "134", "Longest Sequences (bp)": "176740", "N50 (bp)": "82133", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "41.4", "Number of CDSs": "3953", "Average Protein Length": "342.5", "Coding Ratio (%)": "86.8", "Number of rRNAs": "3", "Number of tRNAs": "39", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Algoriphagus faecimaris", "strain": "strain=JCM 16561", "accession": "GCA_002150585.1", "taxid": 686796, "species_taxid": 686796, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1486, "total_fragments": 1494, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Algoriphagus faecimaris", "strain": "strain=DSM 23095", "accession": "GCA_900101705.1", "taxid": 686796, "species_taxid": 686796, "relation_to_type": "type", "validated": true, "ani": 99.986, "matched_fragments": 1468, "total_fragments": 1494, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Algoriphagus hitonicola", "strain": "strain=DSM 19315", "accession": "GCA_900113375.1", "taxid": 435880, "species_taxid": 435880, "relation_to_type": "type", "validated": true, "ani": 80.9925, "matched_fragments": 785, "total_fragments": 1494, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus marincola", "strain": "strain=DSM 16067", "accession": "GCA_000429405.1", "taxid": 264027, "species_taxid": 264027, "relation_to_type": "type", "validated": true, "ani": 79.0569, "matched_fragments": 380, "total_fragments": 1494, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus algorifonticola", "strain": "strain=hg1", "accession": "GCA_007655305.1", "taxid": 2593007, "species_taxid": 2593007, "relation_to_type": "type", "validated": true, "ani": 78.922, "matched_fragments": 375, "total_fragments": 1494, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus ornithinivorans", "strain": "strain=DSM 15282", "accession": "GCA_900115305.1", "taxid": 226506, "species_taxid": 226506, "relation_to_type": "type", "validated": true, "ani": 78.5824, "matched_fragments": 345, "total_fragments": 1494, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus formosus", "strain": "strain=XAY3209", "accession": "GCA_002807035.1", "taxid": 2007308, "species_taxid": 2007308, "relation_to_type": "type", "validated": true, "ani": 78.5622, "matched_fragments": 375, "total_fragments": 1494, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus aquimaris", "strain": "strain=F21", "accession": "GCA_004358035.1", "taxid": 2547398, "species_taxid": 2547398, "relation_to_type": "type", "validated": true, "ani": 78.5506, "matched_fragments": 361, "total_fragments": 1494, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus zhangzhouensis", "strain": "strain=DSM 25035", "accession": "GCA_900148515.1", "taxid": 1073327, "species_taxid": 1073327, "relation_to_type": "type", "validated": true, "ani": 77.9445, "matched_fragments": 281, "total_fragments": 1494, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus zhangzhouensis", "strain": "strain=CGMCC 1.11027", "accession": "GCA_004366575.1", "taxid": 1073327, "species_taxid": 1073327, "relation_to_type": "type", "validated": true, "ani": 77.9138, "matched_fragments": 279, "total_fragments": 1494, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus boritolerans", "strain": "strain=DSM 17298", "accession": "GCA_900108085.1", "taxid": 308111, "species_taxid": 308111, "relation_to_type": "type", "validated": true, "ani": 77.2283, "matched_fragments": 220, "total_fragments": 1494, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Mongoliitalea daihaiensis", "strain": "strain=X100-76", "accession": "GCA_021596945.1", "taxid": 2782006, "species_taxid": 2782006, "relation_to_type": "type", "validated": true, "ani": 77.0962, "matched_fragments": 105, "total_fragments": 1494, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Algoriphagus aquimarinus", "strain": "strain=DSM 23399", "accession": "GCA_900112005.1", "taxid": 237018, "species_taxid": 237018, "relation_to_type": "type", "validated": true, "ani": 76.7877, "matched_fragments": 201, "total_fragments": 1494, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_900101705.1", "gtdb_species": 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