{ "type": "genome", "identifier": "GCF_002150765.1", "organism": "Lentzea kentuckyensis", "title": "Lentzea kentuckyensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "USDA/ARS/NCAUR", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002150765.1", "bioproject": "PRJNA224116", "biosample": "SAMN06294978", "wgs_master": "MUYM00000000.1", "refseq_category": "reference genome", "taxid": "360086", "species_taxid": "360086", "organism_name": "Lentzea kentuckyensis", "infraspecific_name": "strain=NRRL B-24416", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/05/19", "asm_name": "ASM215076v1", "asm_submitter": "USDA/ARS/NCAUR", "gbrs_paired_asm": "GCA_002150765.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/150/765/GCF_002150765.1_ASM215076v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "10210611", "genome_size_ungapped": "10208323", "gc_percent": "69.000000", "replicon_count": "0", "scaffold_count": "261", "contig_count": "261", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002150765.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "9502", "protein_coding_gene_count": "9249", "non_coding_gene_count": "71", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-05-19", "dateModified": "2017-05-19", "datePublished": "2017-05-19", "_annotation": { "sample_count": 1, "sample_organism": [ "Lentzea kentuckyensis" ], "sample_taxid": [ "360086" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA:Lexington, Kentucky" ], "sample_host_location_id": [], "data_size": "2.774 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "10210611", "Number of Sequences": "261", "Longest Sequences (bp)": "294948", "N50 (bp)": "99903", "Gap Ratio (%)": "0.024494", "GCcontent (%)": "68.8", "Number of CDSs": "9216", "Average Protein Length": "331.5", "Coding Ratio (%)": "89.7", "Number of rRNAs": "5", "Number of tRNAs": "78", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Lentzea kentuckyensis", "strain": "strain=NRRL B-24416", "accession": "GCA_002150765.1", "taxid": 360086, "species_taxid": 360086, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 3266, "total_fragments": 3275, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Lentzea alba", "strain": "strain=NEAU-D13", "accession": "GCA_011067745.1", "taxid": 2714351, "species_taxid": 2714351, "relation_to_type": "type", "validated": true, "ani": 93.0298, "matched_fragments": 2560, "total_fragments": 3275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lentzea indica", "strain": "strain=PSKA42", "accession": "GCA_012184385.1", "taxid": 2604800, "species_taxid": 2604800, "relation_to_type": "type", "validated": true, "ani": 89.1984, "matched_fragments": 2148, "total_fragments": 3275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lentzea aerocolonigenes", "strain": "strain=DSM 40034", "accession": "GCA_024171805.1", "taxid": 68170, "species_taxid": 68170, "relation_to_type": "type", "validated": true, "ani": 89.1592, "matched_fragments": 2373, "total_fragments": 3275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lentzea aerocolonigenes", "strain": "strain=NBRC 13195", "accession": "GCA_000974445.1", "taxid": 68170, "species_taxid": 68170, "relation_to_type": "type", "validated": true, "ani": 89.1323, "matched_fragments": 2398, "total_fragments": 3275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lentzea aerocolonigenes", "strain": "strain=NRRL B-3298", "accession": "GCA_000719205.1", "taxid": 68170, "species_taxid": 68170, "relation_to_type": "type", "validated": true, "ani": 89.1183, "matched_fragments": 2377, "total_fragments": 3275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lentzea atacamensis", "strain": "strain=DSM 45479", "accession": "GCA_003269295.1", "taxid": 531938, "species_taxid": 531938, "relation_to_type": "type", "validated": true, "ani": 88.8003, "matched_fragments": 2232, "total_fragments": 3275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lentzea flava", "strain": "strain=DSM 43885", "accession": "GCA_024171845.1", "taxid": 103732, "species_taxid": 103732, "relation_to_type": "type", "validated": true, "ani": 88.7583, "matched_fragments": 2264, "total_fragments": 3275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lentzea terrae", "strain": "strain=NEAU-LZS 42", "accession": "GCA_003265345.1", "taxid": 2200761, "species_taxid": 2200761, "relation_to_type": "type", "validated": true, "ani": 88.7257, "matched_fragments": 2382, "total_fragments": 3275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lentzea waywayandensis", "strain": "strain=DSM 44232", "accession": "GCA_900115955.1", "taxid": 84724, "species_taxid": 84724, "relation_to_type": "type", "validated": true, "ani": 88.6749, "matched_fragments": 2278, "total_fragments": 3275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lentzea nigeriaca", "strain": "strain=DSM 45680", "accession": "GCA_016907955.1", "taxid": 1128665, 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"type", "validated": true, "ani": 88.2071, "matched_fragments": 2159, "total_fragments": 3275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lentzea pudingi", "strain": "strain=CGMCC 4.7319", "accession": "GCA_014646255.1", "taxid": 1789439, "species_taxid": 1789439, "relation_to_type": "type", "validated": true, "ani": 88.1383, "matched_fragments": 2110, "total_fragments": 3275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lentzea cavernae", "strain": "strain=CGMCC 4.7367", "accession": "GCA_014653695.1", "taxid": 2020703, "species_taxid": 2020703, "relation_to_type": "type", "validated": true, "ani": 87.9635, "matched_fragments": 2128, "total_fragments": 3275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lentzea albida", "strain": "strain=DSM 44437", "accession": "GCA_900111005.1", "taxid": 65499, "species_taxid": 65499, "relation_to_type": "type", "validated": true, "ani": 87.8472, "matched_fragments": 2143, "total_fragments": 3275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Lentzea tibetensis", "strain": "strain=FXJ1.1311", "accession": "GCA_007845675.1", "taxid": 2591470, "species_taxid": 2591470, "relation_to_type": "type", "validated": true, "ani": 82.4266, "matched_fragments": 1614, "total_fragments": 3275, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Micromonospora phytophila", "strain": "strain=DSM 105363", "accession": "GCA_023656545.1", "taxid": 709888, "species_taxid": 709888, "relation_to_type": "type", "validated": true, "ani": 76.6925, "matched_fragments": 458, "total_fragments": 3275, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 0.0, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002150765.1", "gtdb_species": "s__Lentzea kentuckyensis", "ani": 100.0, "matched_fragments": 3266, "total_fragments": 3275, "gtdb_taxonomy": 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