{ "type": "genome", "identifier": "GCF_002154415.1", "organism": "Streptomyces angustmyceticus", "title": "Streptomyces angustmyceticus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "USDA/ARS/NCAUR", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002154415.1", "bioproject": "PRJNA224116", "biosample": "SAMN06276655", "wgs_master": "MUAY00000000.1", "refseq_category": "na", "taxid": "285578", "species_taxid": "285578", "organism_name": "Streptomyces angustmyceticus", "infraspecific_name": "strain=NRRL B-2347", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/05/22", "asm_name": "ASM215441v1", "asm_submitter": "USDA/ARS/NCAUR", "gbrs_paired_asm": "GCA_002154415.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/154/415/GCF_002154415.1_ASM215441v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "7462466", "genome_size_ungapped": "7459114", "gc_percent": "72.000000", "replicon_count": "0", "scaffold_count": "874", "contig_count": "874", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002154415.1-RS_2024_04_22", "annotation_date": "2024-04-22", "total_gene_count": "6943", "protein_coding_gene_count": "6478", "non_coding_gene_count": "61", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-05-22", "dateModified": "2017-05-22", "datePublished": "2017-05-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces angustmyceticus" ], "sample_taxid": [ "285578" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan" ], "sample_host_location_id": [], "data_size": "2.017 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 9.38, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "7462466", "Number of Sequences": "874", "Longest Sequences (bp)": "70243", "N50 (bp)": "14867", "Gap Ratio (%)": "0.047545", "GCcontent (%)": "72.1", "Number of CDSs": "6137", "Average Protein Length": "306.1", "Coding Ratio (%)": "75.5", "Number of rRNAs": "3", "Number of tRNAs": "67", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces angustmyceticus", "strain": "strain=NRRL B-2347", "accession": "GCA_002154415.1", "taxid": 285578, "species_taxid": 285578, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2029, "total_fragments": 2061, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptomyces angustmyceticus", "strain": "strain=JCM 4053", "accession": "GCA_019933235.1", "taxid": 285578, "species_taxid": 285578, "relation_to_type": "type", "validated": true, "ani": 99.9752, "matched_fragments": 2057, "total_fragments": 2061, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptomyces angustmyceticus", "strain": "strain=NBRC 3934", "accession": "GCA_009176265.1", "taxid": 285578, "species_taxid": 285578, "relation_to_type": "type", "validated": true, "ani": 99.9607, "matched_fragments": 2051, "total_fragments": 2061, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptomyces caniferus", "strain": "strain=NBRC 15389", "accession": "GCA_009811555.1", "taxid": 285557, "species_taxid": 285557, "relation_to_type": "type", "validated": true, "ani": 92.596, "matched_fragments": 1743, "total_fragments": 2061, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces decoyicus", "strain": "strain=NRRL 2666", "accession": "GCA_001270575.1", "taxid": 249567, "species_taxid": 249567, "relation_to_type": "type", "validated": true, "ani": 90.9635, "matched_fragments": 1625, "total_fragments": 2061, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces libani subsp. libani", "strain": "strain=NBRC 13452", "accession": "GCA_009811595.1", "taxid": 68044, "species_taxid": 68043, "relation_to_type": "type", "validated": true, "ani": 89.8337, "matched_fragments": 1670, "total_fragments": 2061, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces libani subsp. libani", "strain": "strain=JCM 4322", "accession": "GCA_014649275.1", "taxid": 68044, "species_taxid": 68043, "relation_to_type": "type", "validated": true, "ani": 89.8245, "matched_fragments": 1661, "total_fragments": 2061, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces lydicamycinicus", "strain": "strain=NBRC 110027", "accession": "GCA_000829715.2", "taxid": 1546107, "species_taxid": 1546107, "relation_to_type": "type", "validated": true, "ani": 89.5011, "matched_fragments": 1591, "total_fragments": 2061, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces tubercidicus", "strain": "strain=NBRC 13090", "accession": "GCA_009811635.1", "taxid": 47759, "species_taxid": 47759, "relation_to_type": "type", "validated": true, "ani": 89.4898, "matched_fragments": 1558, "total_fragments": 2061, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces platensis", "strain": "strain=DSM 40041", "accession": "GCA_002119195.1", "taxid": 58346, "species_taxid": 58346, "relation_to_type": "type", "validated": true, "ani": 89.4345, "matched_fragments": 1573, "total_fragments": 2061, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces sioyaensis", "strain": "strain=DSM 40032", "accession": "GCA_004122735.1", "taxid": 67364, "species_taxid": 67364, "relation_to_type": "type", "validated": true, "ani": 89.3724, "matched_fragments": 1547, "total_fragments": 2061, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces pinistramenti", "strain": "strain=SF28", "accession": "GCA_020564935.1", "taxid": 2884812, "species_taxid": 2884812, "relation_to_type": "type", "validated": true, "ani": 85.9425, "matched_fragments": 1238, "total_fragments": 2061, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces benahoarensis", "strain": "strain=MZ03-37", "accession": "GCA_007280575.1", "taxid": 2595054, "species_taxid": 2595054, "relation_to_type": "type", "validated": true, "ani": 84.8618, "matched_fragments": 1072, "total_fragments": 2061, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces monomycini", "strain": "strain=NRRL B-24309", "accession": "GCA_022271435.1", "taxid": 371720, 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