{ "type": "genome", "identifier": "GCF_002154495.1", "organism": "Streptomyces cacaoi", "title": "Streptomyces cacaoi", "description": "na", "data type": "Genome sequencing and assembly", "organization": "USDA/ARS/NCAUR", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002154495.1", "bioproject": "PRJNA224116", "biosample": "SAMN06277326", "wgs_master": "MUBL00000000.1", "refseq_category": "na", "taxid": "1898", "species_taxid": "1898", "organism_name": "Streptomyces cacaoi", "infraspecific_name": "strain=NRRL B-1220", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/05/22", "asm_name": "ASM215449v1", "asm_submitter": "USDA/ARS/NCAUR", "gbrs_paired_asm": "GCA_002154495.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/154/495/GCF_002154495.1_ASM215449v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "8136809", "genome_size_ungapped": "8131221", "gc_percent": "73.000000", "replicon_count": "0", "scaffold_count": "981", "contig_count": "981", "annotation_provider": "NCBI RefSeq", "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)", "annotation_date": "2024-01-29", "total_gene_count": "7064", "protein_coding_gene_count": "6577", "non_coding_gene_count": "55", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-05-22", "dateModified": "2017-05-22", "datePublished": "2017-05-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces cacaoi" ], "sample_taxid": [ "1898" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "USA" ], "sample_host_location_id": [], "data_size": "2.177 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 13.54, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "8136809", "Number of Sequences": "981", "Longest Sequences (bp)": "72534", "N50 (bp)": "16615", "Gap Ratio (%)": "0.072326", "GCcontent (%)": "73.2", "Number of CDSs": "6187", "Average Protein Length": "326.4", "Coding Ratio (%)": "74.5", "Number of rRNAs": "3", "Number of tRNAs": "68", "Number of CRISPRs": "7" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces cacaoi", "strain": "strain=NRRL B-1220", "accession": "GCA_002154495.1", "taxid": 1898, "species_taxid": 1898, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 2225, "total_fragments": 2259, "ani_threshold": 95, "status": "conclusive" }, { 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