{ "type": "genome", "identifier": "GCF_002154505.1", "organism": "Streptomyces carpinensis", "title": "Streptomyces carpinensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "USDA/ARS/NCAUR", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002154505.1", "bioproject": "PRJNA224116", "biosample": "SAMN06277327", "wgs_master": "MUBM00000000.1", "refseq_category": "reference genome", "taxid": "66369", "species_taxid": "66369", "organism_name": "Streptomyces carpinensis", "infraspecific_name": "strain=NRRL B-16921", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/05/22", "asm_name": "ASM215450v1", "asm_submitter": "USDA/ARS/NCAUR", "gbrs_paired_asm": "GCA_002154505.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/154/505/GCF_002154505.1_ASM215450v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "10405645", "genome_size_ungapped": "10400713", "gc_percent": "71.000000", "replicon_count": "0", "scaffold_count": "824", "contig_count": "824", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002154505.1-RS_2024_04_22", "annotation_date": "2024-04-22", "total_gene_count": "9895", "protein_coding_gene_count": "9085", "non_coding_gene_count": "78", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-05-22", "dateModified": "2017-05-22", "datePublished": "2017-05-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces carpinensis" ], "sample_taxid": [ "66369" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Brazil: Carpina, Pernambuco" ], "sample_host_location_id": [], "data_size": "2.832 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 91.67, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "10405645", "Number of Sequences": "824", "Longest Sequences (bp)": "141212", "N50 (bp)": "27358", "Gap Ratio (%)": "0.049070", "GCcontent (%)": "71.0", "Number of CDSs": "9108", "Average Protein Length": "299.9", "Coding Ratio (%)": "78.8", "Number of rRNAs": "3", "Number of tRNAs": "93", "Number of CRISPRs": "2" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces carpinensis", "strain": "strain=NRRL B-16921", "accession": "GCA_002154505.1", "taxid": 66369, "species_taxid": 66369, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 3065, "total_fragments": 3095, 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"organism_name": "Streptomyces kebangsaanensis", "strain": "strain=SUK12", "accession": "GCA_001906585.1", "taxid": 864058, "species_taxid": 864058, "relation_to_type": "type", "validated": true, "ani": 87.3785, "matched_fragments": 1582, "total_fragments": 3095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces naganishii", "strain": "strain=JCM 4654", "accession": "GCA_014650575.1", "taxid": 285447, "species_taxid": 285447, "relation_to_type": "type", "validated": true, "ani": 87.3571, "matched_fragments": 1684, "total_fragments": 3095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces thermodiastaticus", "strain": "strain=DSM 40573", "accession": "GCA_021394575.1", "taxid": 44061, "species_taxid": 44061, "relation_to_type": "type", "validated": true, "ani": 85.9661, "matched_fragments": 1439, "total_fragments": 3095, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces 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