{ "type": "genome", "identifier": "GCF_002154605.1", "organism": "Streptomyces milbemycinicus", "title": "Streptomyces milbemycinicus", "description": "na", "data type": "Genome sequencing and assembly", "organization": "USDA/ARS/NCAUR", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002154605.1", "bioproject": "PRJNA224116", "biosample": "SAMN06282496", "wgs_master": "MUNE00000000.1", "refseq_category": "na", "taxid": "476552", "species_taxid": "476552", "organism_name": "Streptomyces milbemycinicus", "infraspecific_name": "strain=NRRL 5739", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/05/22", "asm_name": "ASM215460v1", "asm_submitter": "USDA/ARS/NCAUR", "gbrs_paired_asm": "GCA_002154605.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/154/605/GCF_002154605.1_ASM215460v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "11617640", "genome_size_ungapped": "11610521", "gc_percent": "70.500000", "replicon_count": "0", "scaffold_count": "1328", "contig_count": "1328", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002154605.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "10740", "protein_coding_gene_count": "9809", "non_coding_gene_count": "70", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-05-22", "dateModified": "2017-05-22", "datePublished": "2017-05-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces milbemycinicus" ], "sample_taxid": [ "476552" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Japan" ], "sample_host_location_id": [], "data_size": "3.168 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 3.12, "strain_heterogeneity": 66.67, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "11617640", "Number of Sequences": "1328", "Longest Sequences (bp)": "177374", "N50 (bp)": "17761", "Gap Ratio (%)": "0.063249", "GCcontent (%)": "70.6", "Number of CDSs": "9154", "Average Protein Length": "315.7", "Coding Ratio (%)": "74.6", "Number of rRNAs": "7", "Number of tRNAs": "69", "Number of CRISPRs": "1" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces milbemycinicus", "strain": "strain=NRRL 5739", "accession": "GCA_002154605.1", "taxid": 476552, "species_taxid": 476552, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 3254, "total_fragments": 3276, "ani_threshold": 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"organism_name": "Streptomyces rapamycinicus", "strain": "strain=NRRL 5491", "accession": "GCA_024298965.1", "taxid": 1226757, "species_taxid": 1226757, "relation_to_type": "type", "validated": true, "ani": 84.2376, "matched_fragments": 1908, "total_fragments": 3276, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces rapamycinicus", "strain": "strain=NRRL 5491", "accession": "GCA_003675955.1", "taxid": 1226757, "species_taxid": 1226757, "relation_to_type": "type", "validated": true, "ani": 84.2252, "matched_fragments": 1917, "total_fragments": 3276, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces antimycoticus", "strain": "strain=NBRC 12839", "accession": "GCA_005405925.1", "taxid": 68175, "species_taxid": 68175, "relation_to_type": "type", "validated": true, "ani": 84.2015, "matched_fragments": 1870, "total_fragments": 3276, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces 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"strain=DSM 41764", "accession": "GCA_016103505.1", "taxid": 114698, "species_taxid": 114698, "relation_to_type": "type", "validated": true, "ani": 84.068, "matched_fragments": 1535, "total_fragments": 3276, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces palmae", "strain": "strain=JCM 31289", "accession": "GCA_004684805.1", "taxid": 1701085, "species_taxid": 1701085, "relation_to_type": "type", "validated": true, "ani": 82.1188, "matched_fragments": 1150, "total_fragments": 3276, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces albireticuli", "strain": "strain=NRRL B1670", "accession": "GCA_021228125.1", "taxid": 1940, "species_taxid": 1940, "relation_to_type": "type", "validated": true, "ani": 80.9351, "matched_fragments": 1234, "total_fragments": 3276, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces huiliensis", "strain": "strain=SCA2-4", "accession": "GCA_020037025.1", 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