{ "type": "genome", "identifier": "GCF_002155915.1", "organism": "Streptomyces thermovulgaris", "title": "Streptomyces thermovulgaris", "description": "na", "data type": "Genome sequencing and assembly", "organization": "USDA/ARS/NCAUR", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002155915.1", "bioproject": "PRJNA224116", "biosample": "SAMN06291438", "wgs_master": "MUME00000000.1", "refseq_category": "reference genome", "taxid": "1934", "species_taxid": "1934", "organism_name": "Streptomyces thermovulgaris", "infraspecific_name": "strain=NRRL B-12375", "isolate": "na", "version_status": "latest", "assembly_level": "Scaffold", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/05/22", "asm_name": "ASM215591v1", "asm_submitter": "USDA/ARS/NCAUR", "gbrs_paired_asm": "GCA_002155915.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/155/915/GCF_002155915.1_ASM215591v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "6021617", "genome_size_ungapped": "6018828", "gc_percent": "71.500000", "replicon_count": "0", "scaffold_count": "595", "contig_count": "595", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002155915.1-RS_2024_05_03", "annotation_date": "2024-05-03", "total_gene_count": "5555", "protein_coding_gene_count": "5107", "non_coding_gene_count": "75", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-05-22", "dateModified": "2017-05-22", "datePublished": "2017-05-22", "_annotation": { "sample_count": 1, "sample_organism": [ "Streptomyces thermovulgaris" ], "sample_taxid": [ "1934" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Germany" ], "sample_host_location_id": [], "data_size": "1.629 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 1.04, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "6021617", "Number of Sequences": "595", "Longest Sequences (bp)": "95199", "N50 (bp)": "21010", "Gap Ratio (%)": "0.049073", "GCcontent (%)": "71.7", "Number of CDSs": "5015", "Average Protein Length": "311.3", "Coding Ratio (%)": "77.8", "Number of rRNAs": "5", "Number of tRNAs": "77", "Number of CRISPRs": "15" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Streptomyces thermovulgaris", "strain": "strain=NRRL B-12375", "accession": "GCA_002155915.1", "taxid": 1934, "species_taxid": 1934, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1715, "total_fragments": 1732, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Streptomyces triticisoli", "strain": "strain=NEAU-DSCPA1-4-4", "accession": "GCA_003270085.1", "taxid": 2182797, "species_taxid": 2182797, "relation_to_type": "type", "validated": true, "ani": 90.7315, "matched_fragments": 1280, "total_fragments": 1732, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces kebangsaanensis", "strain": "strain=SUK12", "accession": "GCA_001906585.1", "taxid": 864058, "species_taxid": 864058, "relation_to_type": "type", "validated": true, "ani": 90.7309, "matched_fragments": 1385, "total_fragments": 1732, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces spiralis", "strain": "strain=JCM 3302", "accession": "GCA_014654675.1", "taxid": 66376, "species_taxid": 66376, "relation_to_type": "type", "validated": true, "ani": 86.7874, "matched_fragments": 1295, "total_fragments": 1732, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces naganishii", "strain": "strain=JCM 4654", "accession": "GCA_014650575.1", "taxid": 285447, "species_taxid": 285447, "relation_to_type": "type", "validated": true, "ani": 86.6423, "matched_fragments": 1273, "total_fragments": 1732, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces sennicomposti", "strain": "strain=RCPT1-4", "accession": "GCA_019890635.1", "taxid": 2873384, "species_taxid": 2873384, "relation_to_type": "type", "validated": true, "ani": 86.3751, "matched_fragments": 1174, "total_fragments": 1732, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces thermodiastaticus", "strain": "strain=DSM 40573", "accession": "GCA_021394575.1", "taxid": 44061, "species_taxid": 44061, "relation_to_type": "type", "validated": true, "ani": 85.7485, "matched_fragments": 1156, "total_fragments": 1732, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces thermoviolaceus subsp. thermoviolaceus", "strain": "strain=NBRC 13905", "accession": "GCA_012034235.1", "taxid": 66860, "species_taxid": 1952, "relation_to_type": "type", "validated": true, "ani": 85.5773, "matched_fragments": 1147, "total_fragments": 1732, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces thermoviolaceus subsp. thermoviolaceus", "strain": "strain=JCM 4843", "accession": "GCA_014650975.1", "taxid": 66860, "species_taxid": 1952, "relation_to_type": "type", "validated": true, "ani": 85.5182, "matched_fragments": 1154, "total_fragments": 1732, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces griseicoloratus", "strain": "strain=TRM S81-3", "accession": "GCA_014534645.1", "taxid": 2752516, "species_taxid": 2752516, "relation_to_type": "type", "validated": true, "ani": 85.0742, "matched_fragments": 1233, "total_fragments": 1732, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces echinoruber", "strain": "strain=JCM 5016", "accession": "GCA_014651135.1", "taxid": 68898, "species_taxid": 68898, "relation_to_type": "type", "validated": true, "ani": 84.9893, "matched_fragments": 1239, "total_fragments": 1732, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces fumigatiscleroticus", "strain": "strain=JCM 3101", "accession": "GCA_014647975.1", "taxid": 66371, "species_taxid": 66371, "relation_to_type": "type", "validated": true, "ani": 84.8624, "matched_fragments": 1224, "total_fragments": 1732, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces lomondensis", "strain": "strain=DSM 41428", "accession": "GCA_021440105.1", "taxid": 68229, "species_taxid": 68229, "relation_to_type": "type", "validated": true, "ani": 84.7156, "matched_fragments": 1216, "total_fragments": 1732, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Streptomyces corchorusii", "strain": "strain=DSM 40340", "accession": 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85.7554, "matched_fragments": 1247, "total_fragments": 1732, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "96.91", "min_intra_species_ani": "96.91", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_014534645.1", "gtdb_species": "s__Streptomyces sp014534645", "ani": 85.0708, "matched_fragments": 1233, "total_fragments": 1732, "gtdb_taxonomy": "d__Bacteria;p__Actinobacteriota;c__Actinomycetia;o__Streptomycetales;f__Streptomycetaceae;g__Streptomyces", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_014651135.1", "gtdb_species": "s__Streptomyces echinoruber", "ani": 84.9715, 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