{ "type": "genome", "identifier": "GCF_002156705.1", "organism": "Natrarchaeobaculum aegyptiacum", "title": "Natrarchaeobaculum aegyptiacum", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Chinese Academy of Agricultural Sciences", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002156705.1", "bioproject": "PRJNA224116", "biosample": "SAMN06349942", "wgs_master": "na", "refseq_category": "reference genome", "taxid": "745377", "species_taxid": "745377", "organism_name": "Natrarchaeobaculum aegyptiacum", "infraspecific_name": "strain=JW/NM-HA 15", "isolate": "na", "version_status": "latest", "assembly_level": "Complete Genome", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/05/23", "asm_name": "ASM215670v1", "asm_submitter": "Chinese Academy of Agricultural Sciences", "gbrs_paired_asm": "GCA_002156705.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/156/705/GCF_002156705.1_ASM215670v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "archaea", "genome_size": "3930546", "genome_size_ungapped": "3930546", "gc_percent": "64.000000", "replicon_count": "1", "scaffold_count": "1", "contig_count": "1", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002156705.1-RS_2024_10_22", "annotation_date": "2024-10-22", "total_gene_count": "3853", "protein_coding_gene_count": "3717", "non_coding_gene_count": "58", "pubmed_id": "29388536" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-05-23", "dateModified": "2017-05-23", "datePublished": "2017-05-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Natrarchaeobaculum aegyptiacum" ], "sample_taxid": [ "745377" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Egypt" ], "sample_host_location_id": [], "data_size": "1.074 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 95.83, "contamination": 8.33, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "3930546", "Number of Sequences": "1", "Longest Sequences (bp)": "3930546", "N50 (bp)": "3930546", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "64.1", "Number of CDSs": "3748", "Average Protein Length": "296.9", "Coding Ratio (%)": "84.9", "Number of rRNAs": "6", "Number of tRNAs": "55", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Halopiger goleimassiliensis", "strain": "strain=IIH3", "accession": "GCA_000455345.1", "taxid": 1293048, "species_taxid": 1293048, "relation_to_type": "type", "validated": true, "ani": 80.9903, "matched_fragments": 726, "total_fragments": 1310, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haloterrigena salina", "strain": "strain=JCM 13891", "accession": "GCA_000337495.1", "taxid": 504937, "species_taxid": 504937, "relation_to_type": "type", "validated": true, "ani": 80.3797, "matched_fragments": 680, "total_fragments": 1310, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halopiger xanaduensis", "strain": "strain=SH-6", "accession": "GCA_000217715.1", "taxid": 387343, "species_taxid": 387343, "relation_to_type": "type", "validated": true, "ani": 80.3392, "matched_fragments": 654, "total_fragments": 1310, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Halopiger aswanensis", "strain": "strain=DSM 13151", "accession": "GCA_003610195.1", "taxid": 148449, "species_taxid": 148449, "relation_to_type": "type", "validated": true, "ani": 80.3269, "matched_fragments": 665, "total_fragments": 1310, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Natrinema pellirubrum", "strain": "strain=DSM 15624", "accession": "GCA_000337635.1", "taxid": 69525, "species_taxid": 69525, "relation_to_type": "type", "validated": true, "ani": 80.1611, "matched_fragments": 606, "total_fragments": 1310, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Natrinema pellirubrum", "strain": "strain=DSM 15624", "accession": "GCA_000230735.3", "taxid": 69525, "species_taxid": 69525, "relation_to_type": "type", "validated": true, "ani": 80.1407, "matched_fragments": 632, "total_fragments": 1310, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haloterrigena salifodinae", "strain": "strain=ZY19", "accession": "GCA_003977755.1", "taxid": 2675099, "species_taxid": 2675099, "relation_to_type": "type", "validated": true, "ani": 80.1219, "matched_fragments": 655, "total_fragments": 1310, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Natrinema amylolyticum", "strain": "strain=LT61", "accession": "GCA_020515625.1", "taxid": 2878679, "species_taxid": 2878679, "relation_to_type": "type", "validated": true, "ani": 79.8737, "matched_fragments": 643, "total_fragments": 1310, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haloterrigena hispanica", "strain": "strain=DSM 18328", "accession": "GCA_004217335.1", "taxid": 392421, "species_taxid": 392421, "relation_to_type": "type", "validated": true, "ani": 79.8586, "matched_fragments": 548, "total_fragments": 1310, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Natronococcus jeotgali", "strain": "strain=DSM 18795", "accession": "GCA_000337695.1", "taxid": 413812, "species_taxid": 413812, "relation_to_type": "type", "validated": true, "ani": 79.838, "matched_fragments": 618, "total_fragments": 1310, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Haloterrigena limicola", "strain": "strain=JCM 13563", "accession": "GCA_000337475.1", "taxid": 370323, "species_taxid": 370323, "relation_to_type": "type", "validated": true, "ani": 79.8343, "matched_fragments": 538, "total_fragments": 1310, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Natronolimnobius baerhuensis", "strain": "strain=CGMCC 1.3597", "accession": "GCA_002177135.1", "taxid": 253108, "species_taxid": 253108, "relation_to_type": "type", "validated": true, "ani": 79.2385, "matched_fragments": 547, "total_fragments": 1310, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 95.83, "contamination": 8.33, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002156705.1", "gtdb_species": "s__Natrarchaeobaculum aegyptiacum", "ani": 100.0, "matched_fragments": 1310, "total_fragments": 1310, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Natrarchaeobaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCA_001563805.1", "gtdb_species": "s__Natrarchaeobaculum sp001563805", "ani": 81.9575, "matched_fragments": 555, "total_fragments": 1310, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Natrarchaeobaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003430825.1", "gtdb_species": "s__Natrarchaeobaculum sulfurireducens", "ani": 81.1677, "matched_fragments": 741, "total_fragments": 1310, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Natrarchaeobaculum", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.22", "min_intra_species_ani": "99.22", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000455345.1", "gtdb_species": "s__Halopiger_A goleimassiliensis", "ani": 80.9839, "matched_fragments": 728, "total_fragments": 1310, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Halopiger_A", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003610195.1", "gtdb_species": "s__Halopiger aswanensis", "ani": 80.3325, "matched_fragments": 663, "total_fragments": 1310, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Halopiger", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003841505.1", "gtdb_species": "s__Natrarchaeobius chitinivorans", "ani": 80.1084, "matched_fragments": 635, "total_fragments": 1310, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Natrarchaeobius", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_003977755.1", "gtdb_species": "s__Haloterrigena salifodinae", "ani": 80.1073, "matched_fragments": 656, "total_fragments": 1310, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Haloterrigena", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.23", "min_intra_species_ani": "98.23", "mean_intra_species_af": "0.92", "min_intra_species_af": "0.92", "num_clustered_genomes": 2, "status": "-" }, { "accession": "GCF_000337475.1", "gtdb_species": "s__Natrinema limicola", "ani": 79.8475, "matched_fragments": 536, "total_fragments": 1310, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Natrinema", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_004217335.1", "gtdb_species": "s__Natrinema hispanicum", "ani": 79.8471, "matched_fragments": 552, "total_fragments": 1310, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Natrinema", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002177135.1", "gtdb_species": "s__Natronolimnobius baerhuensis", "ani": 79.2387, "matched_fragments": 547, "total_fragments": 1310, "gtdb_taxonomy": "d__Archaea;p__Halobacteriota;c__Halobacteria;o__Halobacteriales;f__Natrialbaceae;g__Natronolimnobius", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.89", "min_intra_species_ani": "99.89", "mean_intra_species_af": "1.00", "min_intra_species_af": "1.00", "num_clustered_genomes": 2, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Natrarchaeobaculum", "aegyptiacum" ], "quality": 5, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }