{ "type": "genome", "identifier": "GCF_002156865.1", "organism": "Gottfriedia luciferensis", "title": "Gottfriedia luciferensis", "description": "na", "data type": "Genome sequencing and assembly", "organization": "Lycoming College", "publication": [ {} ], "properties": { "assembly_accession": "GCF_002156865.1", "bioproject": "PRJNA224116", "biosample": "SAMN06693592", "wgs_master": "NCTA00000000.1", "refseq_category": "reference genome", "taxid": "178774", "species_taxid": "178774", "organism_name": "Gottfriedia luciferensis", "infraspecific_name": "strain=DSM 18845", "isolate": "na", "version_status": "latest", "assembly_level": "Contig", "release_type": "Major", "genome_rep": "Full", "seq_rel_date": "2017/05/23", "asm_name": "ASM215686v1", "asm_submitter": "Lycoming College", "gbrs_paired_asm": "GCA_002156865.1", "paired_asm_comp": "identical", "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/156/865/GCF_002156865.1_ASM215686v1", "excluded_from_refseq": "na", "relation_to_type_material": "assembly from type material", "asm_not_live_date": "na ", "assembly_type": "haploid", "group": "bacteria", "genome_size": "4426802", "genome_size_ungapped": "4426802", "gc_percent": "33.000000", "replicon_count": "0", "scaffold_count": "90", "contig_count": "90", "annotation_provider": "NCBI RefSeq", "annotation_name": "GCF_002156865.1-RS_2024_12_11", "annotation_date": "2024-12-11", "total_gene_count": "4411", "protein_coding_gene_count": "4249", "non_coding_gene_count": "104", "pubmed_id": "na" }, "dbXrefs": [], "distribution": null, "Download": null, "status": "public", "visibility": null, "dateCreated": "2017-05-23", "dateModified": "2017-05-23", "datePublished": "2017-05-23", "_annotation": { "sample_count": 1, "sample_organism": [ "Gottfriedia luciferensis" ], "sample_taxid": [ "178774" ], "sample_host_organism": [], "sample_host_organism_id": [], "sample_host_disease": [], "sample_host_disease_id": [], "sample_host_location": [ "Atlantic Ocean: South Sandwich" ], "sample_host_location_id": [], "data_size": "1.240 MB", "sample_ph_range": { "min": null, "max": null }, "sample_temperature_range": { "min": null, "max": null }, "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0, "genome_count": 1 }, "data_type": "G", "data_source": "RefSeq", "_dfast": { "Total Sequence Length (bp)": "4426802", "Number of Sequences": "90", "Longest Sequences (bp)": "446707", "N50 (bp)": "111152", "Gap Ratio (%)": "0.000000", "GCcontent (%)": "32.8", "Number of CDSs": "4328", "Average Protein Length": "278.0", "Coding Ratio (%)": "81.5", "Number of rRNAs": "12", "Number of tRNAs": "69", "Number of CRISPRs": "0" }, "has_analysis": true, "_dfastqc": { "tc_result": [ { "organism_name": "Gottfriedia luciferensis", "strain": "strain=DSM 18845", "accession": "GCA_002156865.1", "taxid": 178774, "species_taxid": 178774, "relation_to_type": "type", "validated": true, "ani": 100.0, "matched_fragments": 1427, "total_fragments": 1433, "ani_threshold": 95, "status": "conclusive" }, { "organism_name": "Gottfriedia acidiceleris", "strain": "strain=NRRL B-41736", "accession": "GCA_002156925.1", "taxid": 371036, "species_taxid": 371036, "relation_to_type": "type", "validated": true, "ani": 84.2126, "matched_fragments": 984, "total_fragments": 1433, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gottfriedia acidiceleris", "strain": "strain=DSM 18954", "accession": "GCA_002128425.1", "taxid": 371036, "species_taxid": 371036, "relation_to_type": "type", "validated": true, "ani": 84.1057, "matched_fragments": 1015, "total_fragments": 1433, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gottfriedia solisilvae", "strain": "strain=CGMCC 1.14993", "accession": "GCA_014640495.1", "taxid": 1516104, "species_taxid": 1516104, "relation_to_type": "type", "validated": true, "ani": 81.5737, "matched_fragments": 765, "total_fragments": 1433, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gottfriedia solisilvae", "strain": "strain=NEAU-cbsb5", "accession": "GCA_002128405.1", "taxid": 1516104, "species_taxid": 1516104, "relation_to_type": "type", "validated": true, "ani": 81.4995, "matched_fragments": 772, "total_fragments": 1433, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Gottfriedia endophyticus", "strain": "strain=RG28", "accession": "GCA_017814275.1", "taxid": 2820819, "species_taxid": 2820819, "relation_to_type": "type", "validated": true, "ani": 78.8482, "matched_fragments": 375, "total_fragments": 1433, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus mycoides", "strain": "strain=DSM 2048", "accession": "GCA_022630575.1", "taxid": 1405, "species_taxid": 1405, "relation_to_type": "type", "validated": true, "ani": 78.3775, "matched_fragments": 148, "total_fragments": 1433, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus anthracis", "strain": "strain=Vollum", "accession": "GCA_022221345.1", "taxid": 1392, "species_taxid": 1392, "relation_to_type": "type", "validated": true, "ani": 77.806, "matched_fragments": 168, "total_fragments": 1433, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus sanguinis", "strain": "strain=BML-BC004", "accession": "GCA_018332475.1", "taxid": 2817476, "species_taxid": 2817476, "relation_to_type": "type", "validated": true, "ani": 77.1954, "matched_fragments": 157, "total_fragments": 1433, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Pseudoneobacillus rhizosphaerae", "strain": "strain=CIP 111885", "accession": "GCA_917563885.1", "taxid": 2880968, "species_taxid": 2880968, "relation_to_type": "type", "validated": true, "ani": 77.1952, "matched_fragments": 85, "total_fragments": 1433, "ani_threshold": 95, "status": "below_threshold" }, { "organism_name": "Bacillus massiliogorillae", "strain": "strain=G2", "accession": "GCA_000380245.2", "taxid": 1243664, "species_taxid": 1243664, "relation_to_type": "type", "validated": true, "ani": 76.824, "matched_fragments": 122, "total_fragments": 1433, "ani_threshold": 95, "status": "below_threshold" } ], "cc_result": { "completeness": 100.0, "contamination": 4.17, "strain_heterogeneity": 0.0 }, "gtdb_result": [ { "accession": "GCF_002156865.1", "gtdb_species": "s__Gottfriedia luciferensis", "ani": 100.0, "matched_fragments": 1427, "total_fragments": 1433, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Gottfriedia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "conclusive" }, { "accession": "GCF_002559405.1", "gtdb_species": "s__Gottfriedia sp002559405", "ani": 84.1847, "matched_fragments": 857, "total_fragments": 1433, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Gottfriedia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001712755.1", "gtdb_species": "s__Gottfriedia luciferensis_B", "ani": 84.1534, "matched_fragments": 1054, "total_fragments": 1433, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Gottfriedia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "99.30", "min_intra_species_ani": "99.28", "mean_intra_species_af": "0.95", "min_intra_species_af": "0.93", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_002128425.1", "gtdb_species": "s__Gottfriedia acidiceler", "ani": 84.1412, "matched_fragments": 1011, "total_fragments": 1433, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Gottfriedia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "98.12", "min_intra_species_ani": "96.26", "mean_intra_species_af": "0.94", "min_intra_species_af": "0.89", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_004138285.1", "gtdb_species": "s__Gottfriedia acidiceleris_A", "ani": 84.1213, "matched_fragments": 1020, "total_fragments": 1433, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Gottfriedia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002577195.1", "gtdb_species": "s__Gottfriedia sp002577195", "ani": 84.1174, "matched_fragments": 935, "total_fragments": 1433, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Gottfriedia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_001420605.1", "gtdb_species": "s__Gottfriedia sp001420605", "ani": 84.1058, "matched_fragments": 1017, "total_fragments": 1433, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Gottfriedia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" }, { "accession": "GCF_002564465.1", "gtdb_species": "s__Gottfriedia sp002564465", "ani": 83.911, "matched_fragments": 1033, "total_fragments": 1433, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Gottfriedia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.47", "min_intra_species_ani": "95.21", "mean_intra_species_af": "0.86", "min_intra_species_af": "0.86", "num_clustered_genomes": 4, "status": "-" }, { "accession": "GCF_013200995.1", "gtdb_species": "s__Gottfriedia sp002556365", "ani": 83.6547, "matched_fragments": 974, "total_fragments": 1433, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Gottfriedia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "95.58", "min_intra_species_ani": "95.58", "mean_intra_species_af": "0.84", "min_intra_species_af": "0.83", "num_clustered_genomes": 3, "status": "-" }, { "accession": "GCF_002574545.1", "gtdb_species": "s__Gottfriedia sp002574545", "ani": 83.6545, "matched_fragments": 930, "total_fragments": 1433, "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Gottfriedia", "ani_circumscription_radius": 95.0, "mean_intra_species_ani": "N/A", "min_intra_species_ani": "N/A", "mean_intra_species_af": "N/A", "min_intra_species_af": "N/A", "num_clustered_genomes": 1, "status": "-" } ] }, "_bac2feature": { "phenotypes": null, "cell_diameter": null, "cell_length": null, "doubling_h": null, "growth_tmp": null, "optimum_tmp": null, "optimum_ph": null, "genome_size": null, "gc_content": null, "coding_genes": null, "rRNA16S_genes": null, "tRNA_genes": null, "gram_stain": null, "sporulation": null, "motility": null, "range_salinity": null, "facultative_respiration": null, "anaerobic_respiration": null, "aerobic_respiration": null, "mesophilic_range_tmp": null, "thermophilic_range_tmp": null, "psychrophilic_range_tmp": null, "bacillus_cell_shape": null, "coccus_cell_shape": null, "filament_cell_shape": null, "coccobacillus_cell_shape": null, "vibrio_cell_shape": null, "spiral_cell_shape": null }, "_genome_taxon": [ "Gottfriedia", "luciferensis" ], "quality": 4, "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f" }