{
    "type": "genome",
    "identifier": "GCF_002156925.1",
    "organism": "Gottfriedia acidiceleris",
    "title": "Gottfriedia acidiceleris",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Lycoming College",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_002156925.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN06692364",
        "wgs_master": "NCSZ00000000.1",
        "refseq_category": "na",
        "taxid": "371036",
        "species_taxid": "371036",
        "organism_name": "Gottfriedia acidiceleris",
        "infraspecific_name": "strain=NRRL B-41736",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Contig",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/05/23",
        "asm_name": "ASM215692v1",
        "asm_submitter": "Lycoming College",
        "gbrs_paired_asm": "GCA_002156925.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/156/925/GCF_002156925.1_ASM215692v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "4783870",
        "genome_size_ungapped": "4783870",
        "gc_percent": "33.000000",
        "replicon_count": "0",
        "scaffold_count": "69",
        "contig_count": "69",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "NCBI Prokaryotic Genome Annotation Pipeline (PGAP)",
        "annotation_date": "2024-01-29",
        "total_gene_count": "4700",
        "protein_coding_gene_count": "4529",
        "non_coding_gene_count": "104",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-05-23",
    "dateModified": "2017-05-23",
    "datePublished": "2017-05-23",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Gottfriedia acidiceleris"
        ],
        "sample_taxid": [
            "371036"
        ],
        "sample_host_organism": [],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "USA: Florida"
        ],
        "sample_host_location_id": [],
        "data_size": "1.340 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 4.17,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "4783870",
        "Number of Sequences": "69",
        "Longest Sequences (bp)": "599120",
        "N50 (bp)": "145156",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "32.8",
        "Number of CDSs": "4675",
        "Average Protein Length": "282.8",
        "Coding Ratio (%)": "82.9",
        "Number of rRNAs": "4",
        "Number of tRNAs": "75",
        "Number of CRISPRs": "0"
    },
    "has_analysis": true,
    "_dfastqc": {
        "tc_result": [
            {
                "organism_name": "Gottfriedia acidiceleris",
                "strain": "strain=NRRL B-41736",
                "accession": "GCA_002156925.1",
                "taxid": 371036,
                "species_taxid": 371036,
                "relation_to_type": "type",
                "validated": true,
                "ani": 100.0,
                "matched_fragments": 1557,
                "total_fragments": 1562,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Gottfriedia acidiceleris",
                "strain": "strain=DSM 18954",
                "accession": "GCA_002128425.1",
                "taxid": 371036,
                "species_taxid": 371036,
                "relation_to_type": "type",
                "validated": true,
                "ani": 99.9757,
                "matched_fragments": 1543,
                "total_fragments": 1562,
                "ani_threshold": 95,
                "status": "conclusive"
            },
            {
                "organism_name": "Gottfriedia luciferensis",
                "strain": "strain=DSM 18845",
                "accession": "GCA_002156865.1",
                "taxid": 178774,
                "species_taxid": 178774,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.0861,
                "matched_fragments": 1007,
                "total_fragments": 1562,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gottfriedia solisilvae",
                "strain": "strain=CGMCC 1.14993",
                "accession": "GCA_014640495.1",
                "taxid": 1516104,
                "species_taxid": 1516104,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.2918,
                "matched_fragments": 750,
                "total_fragments": 1562,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Gottfriedia solisilvae",
                "strain": "strain=NEAU-cbsb5",
                "accession": "GCA_002128405.1",
                "taxid": 1516104,
                "species_taxid": 1516104,
                "relation_to_type": "type",
                "validated": true,
                "ani": 81.2349,
                "matched_fragments": 763,
                "total_fragments": 1562,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Metabacillus endolithicus",
                "strain": "strain=KCTC 33579",
                "accession": "GCA_023078335.1",
                "taxid": 1535204,
                "species_taxid": 1535204,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.0491,
                "matched_fragments": 124,
                "total_fragments": 1562,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Robertmurraya massiliosenegalensis",
                "strain": "strain=JC6",
                "accession": "GCA_000311725.1",
                "taxid": 1287657,
                "species_taxid": 1287657,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.7607,
                "matched_fragments": 76,
                "total_fragments": 1562,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Alkalihalobacterium alkalinitrilicum",
                "strain": "strain=DSM 22532",
                "accession": "GCA_002019605.1",
                "taxid": 427920,
                "species_taxid": 427920,
                "relation_to_type": "type",
                "validated": true,
                "ani": 76.5491,
                "matched_fragments": 96,
                "total_fragments": 1562,
                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
            "contamination": 4.17,
            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_002128425.1",
                "gtdb_species": "s__Gottfriedia acidiceler",
                "ani": 99.9757,
                "matched_fragments": 1543,
                "total_fragments": 1562,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Gottfriedia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "98.12",
                "min_intra_species_ani": "96.26",
                "mean_intra_species_af": "0.94",
                "min_intra_species_af": "0.89",
                "num_clustered_genomes": 3,
                "status": "conclusive"
            },
            {
                "accession": "GCF_004138285.1",
                "gtdb_species": "s__Gottfriedia acidiceleris_A",
                "ani": 92.8776,
                "matched_fragments": 1321,
                "total_fragments": 1562,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Gottfriedia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_002564465.1",
                "gtdb_species": "s__Gottfriedia sp002564465",
                "ani": 92.0005,
                "matched_fragments": 1306,
                "total_fragments": 1562,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Gottfriedia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "95.47",
                "min_intra_species_ani": "95.21",
                "mean_intra_species_af": "0.86",
                "min_intra_species_af": "0.86",
                "num_clustered_genomes": 4,
                "status": "-"
            },
            {
                "accession": "GCF_002559405.1",
                "gtdb_species": "s__Gottfriedia sp002559405",
                "ani": 91.9068,
                "matched_fragments": 1094,
                "total_fragments": 1562,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Gottfriedia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001420605.1",
                "gtdb_species": "s__Gottfriedia sp001420605",
                "ani": 91.8133,
                "matched_fragments": 1319,
                "total_fragments": 1562,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Gottfriedia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            },
            {
                "accession": "GCF_001712755.1",
                "gtdb_species": "s__Gottfriedia luciferensis_B",
                "ani": 91.668,
                "matched_fragments": 1319,
                "total_fragments": 1562,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Gottfriedia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "99.30",
                "min_intra_species_ani": "99.28",
                "mean_intra_species_af": "0.95",
                "min_intra_species_af": "0.93",
                "num_clustered_genomes": 3,
                "status": "-"
            },
            {
                "accession": "GCF_002574545.1",
                "gtdb_species": "s__Gottfriedia sp002574545",
                "ani": 90.3403,
                "matched_fragments": 1208,
                "total_fragments": 1562,
                "gtdb_taxonomy": "d__Bacteria;p__Firmicutes;c__Bacilli;o__Bacillales;f__Bacillaceae_G;g__Gottfriedia",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
                "mean_intra_species_af": "N/A",
                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
                "status": "-"
            }
        ]
    },
    "_bac2feature": {
        "phenotypes": null,
        "cell_diameter": null,
        "cell_length": null,
        "doubling_h": null,
        "growth_tmp": null,
        "optimum_tmp": null,
        "optimum_ph": null,
        "genome_size": null,
        "gc_content": null,
        "coding_genes": null,
        "rRNA16S_genes": null,
        "tRNA_genes": null,
        "gram_stain": null,
        "sporulation": null,
        "motility": null,
        "range_salinity": null,
        "facultative_respiration": null,
        "anaerobic_respiration": null,
        "aerobic_respiration": null,
        "mesophilic_range_tmp": null,
        "thermophilic_range_tmp": null,
        "psychrophilic_range_tmp": null,
        "bacillus_cell_shape": null,
        "coccus_cell_shape": null,
        "filament_cell_shape": null,
        "coccobacillus_cell_shape": null,
        "vibrio_cell_shape": null,
        "spiral_cell_shape": null
    },
    "_genome_taxon": [
        "Gottfriedia",
        "acidiceleris"
    ],
    "quality": 4,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}