{
    "type": "genome",
    "identifier": "GCF_002157205.1",
    "organism": "Kushneria marisflavi",
    "title": "Kushneria marisflavi",
    "description": "na",
    "data type": "Genome sequencing and assembly",
    "organization": "Kyung Hee University",
    "publication": [
        {}
    ],
    "properties": {
        "assembly_accession": "GCF_002157205.1",
        "bioproject": "PRJNA224116",
        "biosample": "SAMN06765534",
        "wgs_master": "na",
        "refseq_category": "reference genome",
        "taxid": "157779",
        "species_taxid": "157779",
        "organism_name": "Kushneria marisflavi",
        "infraspecific_name": "strain=SW32",
        "isolate": "na",
        "version_status": "latest",
        "assembly_level": "Complete Genome",
        "release_type": "Major",
        "genome_rep": "Full",
        "seq_rel_date": "2017/05/24",
        "asm_name": "ASM215720v1",
        "asm_submitter": "Kyung Hee University",
        "gbrs_paired_asm": "GCA_002157205.1",
        "paired_asm_comp": "identical",
        "ftp_path": "https://ftp.ncbi.nlm.nih.gov/genomes/all/GCF/002/157/205/GCF_002157205.1_ASM215720v1",
        "excluded_from_refseq": "na",
        "relation_to_type_material": "assembly from type material",
        "asm_not_live_date": "na        ",
        "assembly_type": "haploid",
        "group": "bacteria",
        "genome_size": "3667185",
        "genome_size_ungapped": "3667185",
        "gc_percent": "59.000000",
        "replicon_count": "1",
        "scaffold_count": "1",
        "contig_count": "1",
        "annotation_provider": "NCBI RefSeq",
        "annotation_name": "GCF_002157205.1-RS_2024_12_09",
        "annotation_date": "2024-12-09",
        "total_gene_count": "3336",
        "protein_coding_gene_count": "3235",
        "non_coding_gene_count": "83",
        "pubmed_id": "na"
    },
    "dbXrefs": [],
    "distribution": null,
    "Download": null,
    "status": "public",
    "visibility": null,
    "dateCreated": "2017-05-24",
    "dateModified": "2017-05-24",
    "datePublished": "2017-05-24",
    "_annotation": {
        "sample_count": 1,
        "sample_organism": [
            "Kushneria marisflavi"
        ],
        "sample_taxid": [
            "157779"
        ],
        "sample_host_organism": [
            "not applicable"
        ],
        "sample_host_organism_id": [],
        "sample_host_disease": [],
        "sample_host_disease_id": [],
        "sample_host_location": [
            "South Korea: Boryung"
        ],
        "sample_host_location_id": [],
        "data_size": "1.029 MB",
        "sample_ph_range": {
            "min": null,
            "max": null
        },
        "sample_temperature_range": {
            "min": null,
            "max": null
        },
        "completeness": 100.0,
        "contamination": 0.0,
        "strain_heterogeneity": 0.0,
        "genome_count": 1
    },
    "data_type": "G",
    "data_source": "RefSeq",
    "_dfast": {
        "Total Sequence Length (bp)": "3667185",
        "Number of Sequences": "1",
        "Longest Sequences (bp)": "3667185",
        "N50 (bp)": "3667185",
        "Gap Ratio (%)": "0.000000",
        "GCcontent (%)": "59.0",
        "Number of CDSs": "3301",
        "Average Protein Length": "328.9",
        "Coding Ratio (%)": "88.8",
        "Number of rRNAs": "12",
        "Number of tRNAs": "69",
        "Number of CRISPRs": "3"
    },
    "has_analysis": true,
    "_dfastqc": {
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                "organism_name": "Kushneria marisflavi",
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                "species_taxid": 157779,
                "relation_to_type": "type",
                "validated": true,
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                "matched_fragments": 1220,
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                "status": "conclusive"
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            {
                "organism_name": "Kushneria marisflavi",
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                "status": "conclusive"
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            {
                "organism_name": "Kushneria konosiri",
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                "status": "below_threshold"
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            {
                "organism_name": "Kushneria phyllosphaerae",
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                "species_taxid": 2100822,
                "relation_to_type": "type",
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                "total_fragments": 1222,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kushneria indalinina",
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                "accession": "GCA_003385845.1",
                "taxid": 184067,
                "species_taxid": 184067,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.5813,
                "matched_fragments": 973,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Kushneria pakistanensis",
                "strain": "strain=KCTC 42082",
                "accession": "GCA_014652795.1",
                "taxid": 1508770,
                "species_taxid": 1508770,
                "relation_to_type": "type",
                "validated": true,
                "ani": 84.0091,
                "matched_fragments": 962,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas tianxiuensis",
                "strain": "strain=BC-M4-5",
                "accession": "GCA_009834345.1",
                "taxid": 2497861,
                "species_taxid": 2497861,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.136,
                "matched_fragments": 189,
                "total_fragments": 1222,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas sulfidoxydans",
                "strain": "strain=MCCC 1A11059",
                "accession": "GCA_017868775.1",
                "taxid": 2733484,
                "species_taxid": 2733484,
                "relation_to_type": "type",
                "validated": true,
                "ani": 78.0253,
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                "total_fragments": 1222,
                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas sulfidivorans",
                "strain": "strain=MCCC 1A13718",
                "accession": "GCA_017868935.1",
                "taxid": 2733488,
                "species_taxid": 2733488,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.7038,
                "matched_fragments": 196,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas campisalis",
                "strain": "strain=A4",
                "accession": "GCA_022341425.1",
                "taxid": 74661,
                "species_taxid": 74661,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.702,
                "matched_fragments": 195,
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                "ani_threshold": 95,
                "status": "below_threshold"
            },
            {
                "organism_name": "Halomonas antri",
                "strain": "strain=Y3S6",
                "accession": "GCA_019430905.1",
                "taxid": 2846777,
                "species_taxid": 2846777,
                "relation_to_type": "type",
                "validated": true,
                "ani": 77.5409,
                "matched_fragments": 193,
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                "ani_threshold": 95,
                "status": "below_threshold"
            }
        ],
        "cc_result": {
            "completeness": 100.0,
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            "strain_heterogeneity": 0.0
        },
        "gtdb_result": [
            {
                "accession": "GCF_002157205.1",
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                "ani": 100.0,
                "matched_fragments": 1221,
                "total_fragments": 1222,
                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Kushneria",
                "ani_circumscription_radius": 95.0,
                "mean_intra_species_ani": "100.00",
                "min_intra_species_ani": "100.00",
                "mean_intra_species_af": "1.00",
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            },
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Kushneria",
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                "mean_intra_species_ani": "N/A",
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                "num_clustered_genomes": 1,
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Kushneria",
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                "mean_intra_species_ani": "N/A",
                "min_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Kushneria",
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                "mean_intra_species_ani": "N/A",
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            },
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                "accession": "GCF_900112585.1",
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                "gtdb_taxonomy": "d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Pseudomonadales;f__Halomonadaceae;g__Kushneria",
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                "mean_intra_species_ani": "N/A",
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                "min_intra_species_af": "N/A",
                "num_clustered_genomes": 1,
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            },
            {
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                "mean_intra_species_ani": "N/A",
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        ]
    },
    "_bac2feature": {
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        "rRNA16S_genes": 4.0,
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        "mesophilic_range_tmp": null,
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        "bacillus_cell_shape": 1.0,
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        "coccobacillus_cell_shape": 0.0,
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    "_genome_taxon": [
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        "marisflavi"
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    "quality": 5,
    "quality_label": "\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f\u2b50\ufe0f"
}